Evidence map›Paper›PMID 24272780›Full record

ArticleJournal of bacteriology2014

Identification of FkpA as a key quality control factor for the biogenesis of outer membrane proteins under heat shock conditions.

Xi Ge, Zhi-Xin Lyu, Yang Liu, Rui Wang, Xin Sheng Zhao, Xinmiao Fu, Zengyi Chang

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Review
  3. Modulation ofBiomedicines · 2023
    Article
  4. FkpA enhances membrane protein folding using an extensive interaction surface.Protein science : a publication of the Protein Society · 2023
    Article
  5. Article
  6. Article
  7. Article
  8. How do Chaperones Bind (Partly) Unfolded Client Proteins?Frontiers in molecular biosciences · 2021
    Review
  9. Domain interactions determine the conformational ensemble of the periplasmic chaperone SurA.Protein science : a publication of the Protein Society · 2020
    Article
  10. Plasticity and transient binding are key ingredients of the periplasmic chaperone network.Protein science : a publication of the Protein Society · 2019
    Article
  11. Review
  12. Review
  13. Peptidyl-Prolyl-Infection and immunity · 2019
    Article
  14. Review
  15. Article
  16. From Chaperones to the Membrane with a BAM!Trends in biochemical sciences · 2016
    Review
  17. Dynamic periplasmic chaperone reservoir facilitates biogenesis of outer membrane proteins.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  18. Environmental Regulation of Yersinia Pathophysiology.Frontiers in cellular and infection microbiology · 2016
    Review
  19. Outer membrane protein biogenesis in Gram-negative bacteria.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Xi GeState Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China.
Zhi-Xin Lyu
Yang Liu
Rui Wang
Xin Sheng Zhao
Xinmiao Fu
Zengyi Chang
Peking University · CNState Key Laboratory for Structural Chemistry of Unstable and Stable Species

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The outer membrane proteins (OMPs) of Gram-negative bacterial cells, as well as the mitochondrion and chloroplast organelles, possess unique and highly stable β-barrel structures. Biogenesis of OMPs in Escherichia coli involves such periplasmic chaperones as SurA and Skp. In this study, we found that the ΔsurA Δskp double-deletion strain of E. coli, although lethal and defective in the biogenesis of OMPs at the normal growth temperature, is viable and effective at the heat shock temperature. We identified FkpA as the multicopy suppressor for the lethal phenotype of the ΔsurA Δskp strain. We also demonstrated that the deletion of fkpA from the ΔsurA cells resulted in only a mild decrease in the levels of folded OMPs at the normal temperature but a severe decrease as well as lethality at the heat shock temperature, whereas the deletion of fkpA from the Δskp cells had no detectable effect on OMP biogenesis at either temperature. These results strongly suggest a functional redundancy between FkpA and SurA for OMP biogenesis under heat shock stress conditions. Mechanistically, we found that FkpA becomes a more efficient chaperone for OMPs under the heat shock condition, with increases in both binding rate and affinity. In light of these observations and earlier reports, we propose a temperature-responsive OMP biogenesis mechanism in which the degrees of functional importance of the three chaperones are such that SurA > Skp > FkpA at the normal temperature but FkpA ≥ SurA > Skp at the heat shock temperature.

Indexed as

Hot TemperatureBacterial Outer Membrane ProteinsCarrier ProteinsDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsGene DeletionGene Expression Regulation, BacterialGenotypeKineticsMembrane ProteinsMolecular ChaperonesPeptidylprolyl IsomeraseBacterial Outer Membrane ProteinsCarrier ProteinsDNA-Binding ProteinsEscherichia coli ProteinsFkpA protein, E coliMembrane ProteinsMolecular ChaperonesPeptidylprolyl IsomeraseSkp protein, E coliSurA protein, E coli

Identifiers

PMID24272780
PMCPMC3911151
OpenAlexW2133323026

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.