ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2014
Population structure and domestication revealed by high-depth resequencing of Korean cultivated and wild soybean genomes.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.
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Who cites it
55 citing papers in PubMed, 118 citations in OpenAlex.
- Soybean Synergies: A Comprehensive Review on Novel Extraction Techniques and Their Role in Unlocking Health Potential.Food science & nutrition · 2025Review
- Uncovering the genetic landscape of soybean accessions from Kazakhstan in comparison with global germplasm using whole genome resequencing.BMC genomics · 2025Article
- Landscape of rare-allele variants in cultivated and wild soybean genomes.The plant genome · 2025Article
- The genomic landscape of gene-level structural variations in Japanese and global soybean Glycine max cultivars.Nature genetics · 2025Article
- Genetic diversity, population structure in a historical panel of Brazilian soybean cultivars.PloS one · 2025Article
- Comparative Transcriptomic Analysis Reveals Domestication and Improvement Patterns of Broomcorn Millet (International journal of molecular sciences · 2024Article
- Domestication of azuki bean and soybean in Japan: From the insight of archeological and molecular evidence.Breeding science · 2023Article
- Genome-Wide Association Studies of Seven Root Traits in Soybean (International journal of molecular sciences · 2023Article
- Article
- Impact of multiple selective breeding programs on genetic diversity in soybean germplasm.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Putative variants, genetic diversity and population structure among Soybean cultivars bred at different ages in Huang-Huai-Hai region.Scientific reports · 2022Article
- Progress in soybean functional genomics over the past decade.Plant biotechnology journal · 2022Review
- Domestication and improvement genes reveal the differences of seed size- and oil-related traits in soybean domestication and improvement.Computational and structural biotechnology journal · 2022Article
- The pan-genome of the cultivated soybean (PanSoy) reveals an extraordinarily conserved gene content.Plant biotechnology journal · 2021Article
- Genetic mapping high protein content QTL from soybean 'Nanxiadou 25' and candidate gene analysis.BMC plant biology · 2021Article
- Analysis of genome variants in dwarf soybean lines obtained in F6 derived from cross of normal parents (cultivated and wild soybean).Genomics & informatics · 2021Article
- Soybean (Glycine max) Haplotype Map (GmHapMap): a universal resource for soybean translational and functional genomics.Plant biotechnology journal · 2021Article
- Genomic resources in plant breeding for sustainable agriculture.Journal of plant physiology · 2021Review
- Whole-genome sequence diversity and association analysis of 198 soybean accessions in mini-core collections.DNA research : an international journal for rapid publication of reports on genes and genomes · 2021Article
- The patterns of deleterious mutations during the domestication of soybean.Nature communications · 2021Article
Corrections and comments
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Authors and funding
13 authors at 5 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Despite the importance of soybean as a major crop, genome-wide variation and evolution of cultivated soybeans are largely unknown. Here, we catalogued genome variation in an annual soybean population by high-depth resequencing of 10 cultivated and 6 wild accessions and obtained 3.87 million high-quality single-nucleotide polymorphisms (SNPs) after excluding the sites with missing data in any accession. Nuclear genome phylogeny supported a single origin for the cultivated soybeans. We identified 10-fold longer linkage disequilibrium (LD) in the wild soybean relative to wild maize and rice. Despite the small population size, the long LD and large SNP data allowed us to identify 206 candidate domestication regions with significantly lower diversity in the cultivated, but not in the wild, soybeans. Some of the genes in these candidate regions were associated with soybean homologues of canonical domestication genes. However, several examples, which are likely specific to soybean or eudicot crop plants, were also observed. Consequently, the variation data identified in this study should be valuable for breeding and for identifying agronomically important genes in soybeans. However, the long LD of wild soybeans may hinder pinpointing causal gene(s) in the candidate regions.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.