ArticleNucleic acids research2014
The Gene Expression Barcode 3.0: improved data processing and mining tools.
Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.
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Who cites it
44 citing papers in PubMed.
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- Targeting Aggressive B-cell Lymphomas through Pharmacological Activation of the Mitochondrial Protease OMA1.Molecular cancer therapeutics · 2023Article
- PanomiR: a systems biology framework for analysis of multi-pathway targeting by miRNAs.Briefings in bioinformatics · 2023Article
- Guselkumab Modulates Differentially Expressed Genes in Blood of Patients With Psoriatic Arthritis: Results from Two Phase 3, Randomized, Placebo-Controlled Trials.ACR open rheumatology · 2023Article
- ELIMINATOR: essentiality analysis using multisystem networks and integer programming.BMC bioinformatics · 2022Article
- A pipeline for the reconstruction and evaluation of context-specific human metabolic models at a large-scale.PLoS computational biology · 2022Article
- Differential DNA methylation and mRNA transcription in gingival tissues in periodontal health and disease.Journal of clinical periodontology · 2021Article
- Cell Type-Specific Decomposition of Gingival Tissue Transcriptomes.Journal of dental research · 2021Article
- A dynamic multi-tissue model to study human metabolism.NPJ systems biology and applications · 2021Article
- Proactive visual and statistical analysis of genomic data in Epiviz.Bioinformatics (Oxford, England) · 2020Article
- On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models.Bioinformatics (Oxford, England) · 2020Article
- Microarray Normalization Revisited for Reproducible Breast Cancer Biomarkers.BioMed research international · 2020Article
- An integrative method to predict signalling perturbations for cellular transitions.Nucleic acids research · 2019Article
- PAI-1 augments mucosal damage in colitis.Science translational medicine · 2019Article
- Systems based analysis of human embryos and gene networks involved in cell lineage allocation.BMC genomics · 2019Article
- Deletion of the formin Diaph1 protects from structural and functional abnormalities in the murine diabetic kidney.American journal of physiology. Renal physiology · 2018Article
- Two-phase differential expression analysis for single cell RNA-seq.Bioinformatics (Oxford, England) · 2018Article
- The Pathway Coexpression Network: Revealing pathway relationships.PLoS computational biology · 2018Article
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7 authors.
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Abstract
The Gene Expression Barcode project, http://barcode.luhs.org, seeks to determine the genes expressed for every tissue and cell type in humans and mice. Understanding the absolute expression of genes across tissues and cell types has applications in basic cell biology, hypothesis generation for gene function and clinical predictions using gene expression signatures. In its current version, this project uses the abundant publicly available microarray data sets combined with a suite of single-array preprocessing, quality control and analysis methods. In this article, we present the improvements that have been made since the previous version of the Gene Expression Barcode in 2011. These include a variety of new data mining tools and summaries, estimated transcriptomes and curated annotations.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.