Evidence map›Paper›PMID 24271162›Full record

ArticleApplied and environmental microbiology2014

Novel highly thermostable endolysin from Thermus scotoductus MAT2119 bacteriophage Ph2119 with amino acid sequence similarity to eukaryotic peptidoglycan recognition proteins.

Magdalena Plotka, Anna-Karina Kaczorowska, Aleksandra Stefanska, Agnieszka Morzywolek, Olafur H Fridjonsson, Stanislaw Dunin-Horkawicz, Lukasz Kozlowski, Gudmundur O Hreggvidsson, Jakob K Kristjansson, Slawomir Dabrowski and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
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  7. Review
  8. Article
  9. Article
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  11. Molecular Characterization of a DNA Polymerase fromInternational journal of molecular sciences · 2022
    Article
  12. Article
  13. Antimicrobial Potential of the GeneraAntibiotics (Basel, Switzerland) · 2022
    Review
  14. Article
  15. Review
  16. Novel Lytic Enzyme of Prophage Origin fromInternational journal of molecular sciences · 2021
    Article
  17. Article
  18. Molecular Characterization of a Novel Lytic Enzyme LysC fromInternational journal of molecular sciences · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Magdalena PlotkaDepartment of Microbiology, University of Gdansk, Gdansk, Poland.
Anna-Karina Kaczorowska
Aleksandra Stefanska
Agnieszka Morzywolek
Olafur H Fridjonsson
Stanislaw Dunin-Horkawicz
Lukasz Kozlowski
Gudmundur O Hreggvidsson
Jakob K Kristjansson
Slawomir Dabrowski
Janusz M Bujnicki
Tadeusz Kaczorowski
University of Gdańsk · PLInternational Institute of Molecular and Cell Biology · PLMatís (Iceland) · ISA&A Biotechnology (Poland) · PLProkazyme (Iceland) · IS

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, we present the discovery and characterization of a highly thermostable endolysin from bacteriophage Ph2119 infecting Thermus strain MAT2119 isolated from geothermal areas in Iceland. Nucleotide sequence analysis of the 16S rRNA gene affiliated the strain with the species Thermus scotoductus. Bioinformatics analysis has allowed identification in the genome of phage 2119 of an open reading frame (468 bp in length) coding for a 155-amino-acid basic protein with an Mr of 17,555. Ph2119 endolysin does not resemble any known thermophilic phage lytic enzymes. Instead, it has conserved amino acid residues (His(30), Tyr(58), His(132), and Cys(140)) that form a Zn(2+) binding site characteristic of T3 and T7 lysozymes, as well as eukaryotic peptidoglycan recognition proteins, which directly bind to, but also may destroy, bacterial peptidoglycan. The purified enzyme shows high lytic activity toward thermophiles, i.e., T. scotoductus (100%), Thermus thermophilus (100%), and Thermus flavus (99%), and also, to a lesser extent, toward mesophilic Gram-negative bacteria, i.e., Escherichia coli (34%), Serratia marcescens (28%), Pseudomonas fluorescens (13%), and Salmonella enterica serovar Panama (10%). The enzyme has shown no activity against a number of Gram-positive bacteria analyzed, with the exception of Deinococcus radiodurans (25%) and Bacillus cereus (15%). Ph2119 endolysin was found to be highly thermostable: it retains approximately 87% of its lytic activity after 6 h of incubation at 95°C. The optimum temperature range for the enzyme activity is 50°C to 78°C. The enzyme exhibits lytic activity in the pH range of 6 to 10 (maximum at pH 7.5 to 8.0) and is also active in the presence of up to 500 mM NaCl.

Indexed as

BacteriolysisBacteriophagesCarrier ProteinsDNA, ViralEndopeptidasesEnvironmental MicrobiologyEnzyme StabilityIcelandMolecular Sequence DataMolecular WeightSequence Analysis, DNASequence Homology, Amino AcidTemperatureThermusCarrier ProteinsDNA, ViralendolysinEndopeptidasespeptidoglycan recognition protein

Identifiers

PMID24271162
PMCPMC3911187
OpenAlexW2127115355

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.