ArticleJournal of biomedical semantics2013
PAV ontology: provenance, authoring and versioning.
Article in Journal of biomedical semantics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- The FAIRSCAPE AI-readiness Framework for Biomedical Research.bioRxiv : the preprint server for biology · 2026Article
- Provenance Information for Biomedical Data and Workflows: Scoping Review.Journal of medical Internet research · 2024Article
- Evaluating FAIR Digital Object and Linked Data as distributed object systems.PeerJ. Computer science · 2024Article
- FAIR-Checker: supporting digital resource findability and reuse with Knowledge Graphs and Semantic Web standards.Journal of biomedical semantics · 2023Article
- Lightweight Distributed Provenance Model for Complex Real-world Environments.Scientific data · 2022Article
- Toward a standard formal semantic representation of the model card report.BMC bioinformatics · 2022Article
- A Simple Standard for Sharing Ontological Mappings (SSSOM).Database : the journal of biological databases and curation · 2022Article
- Providing Adverse Outcome Pathways from the AOP-Wiki in a Semantic Web Format to Increase Usability and Accessibility of the Content.Applied in vitro toxicology · 2022Article
- Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation.Journal of biomedical semantics · 2022Article
- An automated solution for measuring the progress toward FAIR research data.Patterns (New York, N.Y.) · 2021Article
- The role of metadata in reproducible computational research.Patterns (New York, N.Y.) · 2021Review
- Harmonizing semantic annotations for computational models in biology.Briefings in bioinformatics · 2019Review
- Seeing the whole picture: integrated pre-surgery reports with PreOptique.Journal of biomedical semantics · 2019Article
- SOCCOMAS: a FAIR web content management system that uses knowledge graphs and that is based on semantic programming.Database : the journal of biological databases and curation · 2019Article
- Enabling precision medicine via standard communication of HTS provenance, analysis, and results.PLoS biology · 2018Article
- Developing a healthcare dataset information resource (DIR) based on Semantic Web.BMC medical genomics · 2018Article
- FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability.Database : the journal of biological databases and curation · 2018Article
- Biotea: semantics for Pubmed Central.PeerJ · 2018Article
- COMODI: an ontology to characterise differences in versions of computational models in biology.Journal of biomedical semantics · 2016Article
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Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundProvenance is a critical ingredient for establishing trust of published scientific content. This is true whether we are considering a data set, a computational workflow, a peer-reviewed publication or a simple scientific claim with supportive evidence. Existing vocabularies such as Dublin Core Terms (DC Terms) and the W3C Provenance Ontology (PROV-O) are domain-independent and general-purpose and they allow and encourage for extensions to cover more specific needs. In particular, to track authoring and versioning information of web resources, PROV-O provides a basic methodology but not any specific classes and properties for identifying or distinguishing between the various roles assumed by agents manipulating digital artifacts, such as author, contributor and curator.
resultsWe present the Provenance, Authoring and Versioning ontology (PAV, namespace http://purl.org/pav/): a lightweight ontology for capturing "just enough" descriptions essential for tracking the provenance, authoring and versioning of web resources. We argue that such descriptions are essential for digital scientific content. PAV distinguishes between contributors, authors and curators of content and creators of representations in addition to the provenance of originating resources that have been accessed, transformed and consumed. We explore five projects (and communities) that have adopted PAV illustrating their usage through concrete examples. Moreover, we present mappings that show how PAV extends the W3C PROV-O ontology to support broader interoperability.
methodThe initial design of the PAV ontology was driven by requirements from the AlzSWAN project with further requirements incorporated later from other projects detailed in this paper. The authors strived to keep PAV lightweight and compact by including only those terms that have demonstrated to be pragmatically useful in existing applications, and by recommending terms from existing ontologies when plausible. DISCUSSION: We analyze and compare PAV with related approaches, namely Provenance Vocabulary (PRV), DC Terms and BIBFRAME. We identify similarities and analyze differences between those vocabularies and PAV, outlining strengths and weaknesses of our proposed model. We specify SKOS mappings that align PAV with DC Terms. We conclude the paper with general remarks on the applicability of PAV.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.