Evidence map›Paper›PMID 24267896›Full record

ArticleCell2013

Temporal response of the human virome to immunosuppression and antiviral therapy.

Iwijn De Vlaminck, Kiran K Khush, Calvin Strehl, Bitika Kohli, Helen Luikart, Norma F Neff, Jennifer Okamoto, Thomas M Snyder, David N Cornfield, Mark R Nicolls and 4 more

3 registry-linked trialsOpen access · bronzeAbstract read
In one paragraph

Article in Cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 3 registered trials, which are not on this map. Cited by 271 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
271citing papers in PubMed, 4 pooled it
18.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01985412 completednot on this map

Genome Transplant Dynamics: Non-Invasive Sequencing-Based Diagnosis of Rejection

TypeobservationalSponsorStanford UniversityRan2010 to 2013Enrolled65ConditionsCardiac Transplant Rejection, Lung Transplant Rejection
NCT02423070 recruitingnot on this mapstarted 2015, after this paper: background citation

Genome Transplant Dynamics

TypeobservationalSponsorNational Heart, Lung, and Blood Institute (NHLBI)Ran2015 to 2034Enrolled991ConditionsThoracic Organ Transplantation
NCT05727709 unknown statusnot on this mapstarted 2023, after this paper: background citation

Dynamic Changes of Torquetenovirus Load in Chinese Renal Transplant Recipients During Immunosuppressive Therapy: A Double-blind Multicenter Prospective Observational Cohort Study

TypeobservationalSponsorTongji HospitalRan2023 to 2024Enrolled220ConditionsKidney Transplant Rejection, Kidney Transplant Infection, Virus, Immunosuppression
3 · Its place in the literature

Who cites it

271 citing papers in PubMed, 4 syntheses or guidelines pooled it, 483 citations in OpenAlex.

  1. Pooled it
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  6. Review
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  9. Anellovirus-mediated interferon dysregulation enhances virus-induced lung injury.American journal of respiratory cell and molecular biology · 2026
    Article
  10. Torque teno virus in the lower respiratory tract: association with immunosuppression but not mortality in severe pneumonia-a multicenter retrospective cohort study.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2026
    Article
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  16. Observational
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211 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Iwijn De VlaminckDepartmets of Bioengineering and Applied Physics, Stanford University and the Howard Hughes Medical Institute, Stanford, CA 94305, USA.
Kiran K Khush
Calvin Strehl
Bitika Kohli
Helen Luikart
Norma F Neff
Jennifer Okamoto
Thomas M Snyder
David N Cornfield
Mark R Nicolls
David Weill
Daniel Bernstein
Hannah A Valantine
Stephen R Quake
Stanford Medicine · USHoward Hughes Medical Institute · USStanford University · US

Funding

The Cellular Response to Elafin in PAHP01HL108797 · NHLBI · STANFORD UNIVERSITY · PI ZAMANIAN, ROHAM · 2011 to 2021
$19.7M
Critical Role for Microvasculature in Airway TransplantationR01HL095686 · NHLBI · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI NICOLLS, MARK ROBERT · 2010 to 2022
$4.7M
NIH Director's Pioneer Award (RMI)DP1OD000251 · OD · STANFORD UNIVERSITY · PI QUAKE, STEPHEN R · 2004 to 2008
$3.9M
Molecular regulation of pulmonary vascular KCa ChannelsR01HL070628 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI CORNFIELD, DAVID N. · 2003 to 2015
$2.8M
Genome Transplant Dynamics: non-invasive sequencing-based diagnosis of rejectionRC4AI092673 · NIAID · STANFORD UNIVERSITY · PI QUAKE, STEPHEN R, VALANTINE, HANNAH AUGUSTA · 2010 to 2010
$2.5M
Clinical and Genetic Evaluation of Donors for Cardiac TransplantationK23HL091143 · NHLBI · STANFORD UNIVERSITY · PI KHUSH, KIRAN KAUR · 2009 to 2013
$674k
Howard Hughes Medical InstituteNHLBI NIH HHS K23HL091143NHLBI NIH HHS P01 HL108797NHLBI NIH HHS R01 HL070628NHLBI NIH HHS R01 HL095686NIAID NIH HHS RC4 AI092673NIAID NIH HHS RC4AI092673NIH HHS DP1 OD000251
6 · The paper itself

Abstract

There are few substantive methods to measure the health of the immune system, and the connection between immune strength and the viral component of the microbiome is poorly understood. Organ transplant recipients are treated with posttransplant therapies that combine immunosuppressive and antiviral drugs, offering a window into the effects of immune modulation on the virome. We used sequencing of cell-free DNA in plasma to investigate drug-virome interactions in a cohort of organ transplant recipients (656 samples, 96 patients) and find that antivirals and immunosuppressants strongly affect the structure of the virome in plasma. We observe marked virome compositional dynamics at the onset of the therapy and find that the total viral load increases with immunosuppression, whereas the bacterial component of the microbiome remains largely unaffected. The data provide insight into the relationship between the human virome, the state of the immune system, and the effects of pharmacological treatment and offer a potential application of the virome state to predict immunocompetence.

Indexed as

Heart TransplantationLung TransplantationAdultAntibiotic ProphylaxisAntiviral AgentsBloodChildDNAHumansImmunosuppressive AgentsVirusesAntiviral AgentsDNAImmunosuppressive Agents

Identifiers

PMID24267896
PMCPMC4098717
OpenAlexW2012991226

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.