Evidence map›Paper›PMID 24267890›Full record

ArticleCell2013

Phosphorylation-regulated binding of RNA polymerase II to fibrous polymers of low-complexity domains.

Ilmin Kwon, Masato Kato, Siheng Xiang, Leeju Wu, Pano Theodoropoulos, Hamid Mirzaei, Tina Han, Shanhai Xie, Jeffry L Corden, Steven L McKnight

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 365 papers.

0numbers the graph read from it
0cells of the map it votes in
365citing papers in PubMed
14.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

365 citing papers in PubMed, 565 citations in OpenAlex.

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305 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Ilmin Kwon *Department of Biochemistry University of Texas Southwestern Medical Center 5323 Harry Hines Boulevard Dallas, TX 75390-9152.
Masato Kato *Department of Biochemistry University of Texas Southwestern Medical Center 5323 Harry Hines Boulevard Dallas, TX 75390-9152.
Siheng XiangDepartment of Biochemistry University of Texas Southwestern Medical Center 5323 Harry Hines Boulevard Dallas, TX 75390-9152.
Leeju WuDepartment of Biochemistry University of Texas Southwestern Medical Center 5323 Harry Hines Boulevard Dallas, TX 75390-9152.
Pano TheodoropoulosDepartment of Biochemistry University of Texas Southwestern Medical Center 5323 Harry Hines Boulevard Dallas, TX 75390-9152.
Hamid MirzaeiDepartment of Biochemistry University of Texas Southwestern Medical Center 5323 Harry Hines Boulevard Dallas, TX 75390-9152.
Tina HanDepartment of Biochemistry University of Texas Southwestern Medical Center 5323 Harry Hines Boulevard Dallas, TX 75390-9152.
Shanhai XieDepartment of Biochemistry University of Texas Southwestern Medical Center 5323 Harry Hines Boulevard Dallas, TX 75390-9152.
Jeffry L CordenDepartment of Molecular Biology and Genetics The Johns Hopkins University School of Medicine Baltimore, MD 21205.
Steven L McKnightDepartment of Biochemistry University of Texas Southwestern Medical Center 5323 Harry Hines Boulevard Dallas, TX 75390-9152.
The University of Texas Southwestern Medical Center · USSouthwestern Medical CenterJohns Hopkins University · US

Funding

RNA-binding RNA Polymerase II CTD-Associated ProteinsR01GM066108 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI CORDEN, JEFFRY L. · 2002 to 2016
$4.8M
NIGMS NIH HHS GM066108NIGMS NIH HHS R01 GM066108
6 · The paper itself

Abstract

The low-complexity (LC) domains of the products of the fused in sarcoma (FUS), Ewings sarcoma (EWS), and TAF15 genes are translocated onto a variety of different DNA-binding domains and thereby assist in driving the formation of cancerous cells. In the context of the translocated fusion proteins, these LC sequences function as transcriptional activation domains. Here, we show that polymeric fibers formed from these LC domains directly bind the C-terminal domain (CTD) of RNA polymerase II in a manner reversible by phosphorylation of the iterated, heptad repeats of the CTD. Mutational analysis indicates that the degree of binding between the CTD and the LC domain polymers correlates with the strength of transcriptional activation. These studies offer a simple means of conceptualizing how RNA polymerase II is recruited to active genes in its unphosphorylated state and released for elongation following phosphorylation of the CTD.

Indexed as

Transcriptional ActivationHeLa CellsHumansHydrogelsMicrosatellite RepeatsPhosphorylationPolymerizationProtein Structure, TertiaryRNA-Binding Protein EWSRNA-Binding Protein FUSRNA Polymerase IITATA-Binding Protein Associated FactorsHydrogelsRNA-Binding Protein EWSRNA-Binding Protein FUSRNA Polymerase IITAF15 protein, humanTATA-Binding Protein Associated Factors

Identifiers

PMID24267890
PMCPMC4010232
OpenAlexW2093140735

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.