ArticlePloS one2013
Transcriptome analysis of leaf tissue of Raphanus sativus by RNA sequencing.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
- Global gene expression perturbations in rapeseed due to the introduction of alien radish chromosomes.Journal of genetics · 2021Article
- Comparative transcriptome analysis of root, stem, and leaf tissues of Entada phaseoloides reveals potential genes involved in triterpenoid saponin biosynthesis.BMC genomics · 2020Article
- De novo assembly and characterization of transcriptome in the medicinal plant Euphorbia jolkini.Genes & genomics · 2020Article
- Comparative transcriptome analysis of roots, stems and leaves of Isodon amethystoides reveals candidate genes involved in Wangzaozins biosynthesis.BMC plant biology · 2018Article
- Transcriptome analysis of a taxol-producing endophytic fungus Cladosporium cladosporioides MD2.AMB Express · 2018Article
- Genome-wide identification and characterization of CONSTANS-like gene family in radish (Raphanus sativus).PloS one · 2018Article
- Comparative transcriptomic analysis of mice liver treated with different AMPK activators in a mice model of atherosclerosis.Oncotarget · 2017Article
- De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering.BMC genomics · 2016Article
- De novo Transcriptome Generation and Annotation for Two Korean Endemic Land Snails, Aegista chejuensis and Aegista quelpartensis, Using Illumina Paired-End Sequencing Technology.International journal of molecular sciences · 2016Article
- Transcriptomic Analysis Identifies Differentially Expressed Genes (DEGs) Associated with Bolting and Flowering in Radish (Raphanus sativus L.).Frontiers in plant science · 2016Article
- De Novo Transcriptome Analysis of Medicinally Important Plantago ovata Using RNA-Seq.PloS one · 2016Article
- De novo Taproot Transcriptome Sequencing and Analysis of Major Genes Involved in Sucrose Metabolism in Radish (Raphanus sativus L.).Frontiers in plant science · 2016Article
- Different Gene Expression Patterns between Leaves and Flowers in Lonicera japonica Revealed by Transcriptome Analysis.Frontiers in plant science · 2016Article
- De novo Assembly of Leaf Transcriptome in the Medicinal Plant Andrographis paniculata.Frontiers in plant science · 2016Article
- Differential Network Analysis Reveals Evolutionary Complexity in Secondary Metabolism of Rauvolfia serpentina over Catharanthus roseus.Frontiers in plant science · 2016Article
- Transcriptome profile analysis of cell proliferation molecular processes during multicellular trichome formation induced by tomato Wo (v) gene in tobacco.Genomics data · 2015Article
- Transcriptome profile analysis of cell proliferation molecular processes during multicellular trichome formation induced by tomato Wov gene in tobacco.BMC genomics · 2015Article
- Commentary: Comparative Transcriptome Analysis of Raphanus sativus Tissues.Frontiers in plant science · 2015Article
- Sequencing, de novo assembly and comparative analysis of Raphanus sativus transcriptome.Frontiers in plant science · 2015Article
- De novo assembly and characterization of the transcriptome of seagrass Zostera marina using Illumina paired-end sequencing.PloS one · 2014Article
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Raphanus sativus is not only a popular edible vegetable but also an important source of medicinal compounds. However, the paucity of knowledge about the transcriptome of R. sativus greatly impedes better understanding of the functional genomics and medicinal potential of R. sativus. In this study, the transcriptome sequencing of leaf tissues in R. sativus was performed for the first time. Approximately 22 million clean reads were generated and used for transcriptome assembly. The generated unigenes were subsequently annotated against gene ontology (GO) database. KEGG analysis further revealed two important pathways in the bolting stage of R.sativus including spliceosome assembly and alkaloid synthesis. In addition, a total of 6,295 simple sequence repeats (SSRs) with various motifs were identified in the unigene library of R. sativus. Finally, four unigenes of R. sativus were selected for alignment with their homologs from other plants, and phylogenetic trees for each of the genes were constructed. Taken together, this study will provide a platform to facilitate gene discovery and advance functional genomic research of R. sativus.
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