Evidence map›Paper›PMID 24265153›Full record

ArticleCancer discovery2014

The genetic landscape of clinical resistance to RAF inhibition in metastatic melanoma.

Eliezer M Van Allen, Nikhil Wagle, Antje Sucker, Daniel J Treacy, Cory M Johannessen, Eva M Goetz, Chelsea S Place, Amaro Taylor-Weiner, Steven Whittaker, Gregory V Kryukov and 23 more

Abstract read
In one paragraph

Article in Cancer discovery, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 523 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
523citing papers in PubMed, 5 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

523 citing papers in PubMed, 5 syntheses or guidelines pooled it.

  1. Pooled it
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  5. The Predictive Value ofFrontiers in immunology · 2021
    Pooled it
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  9. iScience · 2026
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463 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors.

Eliezer M Van Allen1Department of Medical Oncology, Dana-Farber Cancer Institute, Harvard Medical School; 2Department of Pathology, Massachusetts General Hospital Cancer Center, Boston; 3Broad Institute of MIT and Harvard; 4Harvard-MIT Division of Health Sciences and Technology, Massachusetts Institute of Technology (MIT), Cambridge, Massachusetts; 5Department of Dermatology, University Hospital, West German Cancer Center, University Duisburg-Essen, Essen; 6German Cancer Consortium (DKTK); 7Department of Dermatology, Heidelberg University Hospital, Heidelberg; 8Department of Dermatology and Allergy, Hannover Medical School, Hannover; 9Department of Dermatology, University of Wuerzburg, Wuerzburg; 10Department of Dermatology, Venerology and Allergology, University of Schleswig-Holstein Hospital, Kiel; 11Department of Dermatology and Allergology, Ludwig-Maximilian University, Munich; 12Department of Dermatology, Venerology and Allergy, Charité Universitätsmedizin Berlin, Humboldt University, Berlin; 13Department of Dermatology, University of Mainz, Mainz; 14University Medical Center, University of Tübingen, Tübingen, Germany; 15Department of Genome Sciences, University of Washington, Seattle, Washington; 16Department of Dermatology, University Hospital Zurich, Zurich, Switzerland; and 17First Department of Medicine, Medical School, University of Athens, Athens, Greece.
Nikhil Wagle
Antje Sucker
Daniel J Treacy
Cory M Johannessen
Eva M Goetz
Chelsea S Place
Amaro Taylor-Weiner
Steven Whittaker
Gregory V Kryukov
Eran Hodis
Mara Rosenberg
Aaron McKenna
Kristian Cibulskis
Deborah Farlow
Lisa Zimmer
Uwe Hillen
Ralf Gutzmer
Simone M Goldinger
Selma Ugurel
Helen J Gogas
Friederike Egberts
Carola Berking
Uwe Trefzer
Carmen Loquai
Benjamin Weide
Jessica C Hassel
Stacey B Gabriel
Scott L Carter
Gad Getz
Levi A Garraway
Dirk Schadendorf
Dermatologic Cooperative Oncology Group of Germany (DeCOG)

Funding

Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6M
HARVARD CLINICAL AND TRANSLATIONAL SCIENCE CENTER (UL1)UL1RR025758 · NCRR · HARVARD MEDICAL SCHOOL · PI NADLER, LEE MARSHALL · 2008 to 2011
$91.4M
Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Targeting Raf in Melanoma: Mechanisms for Effect & Resistance & Opportunities forP50CA093683 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI MIER, JAMES W · 2001 to 2012
$25.8M
Transcriptional mechanisms and melanomaP01CA163222 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI Kai W Wucherpfennig · 2013 to 2026
$25.3M
Physician Scientist Training in Cancer ResearchT32CA009172 · NCI · DANA-FARBER CANCER INSTITUTE · PI Jennifer R Brown, James A. DeCaprio · 1985 to 2026
$17.1M
Defining Melanoma Therapeutic Avenues by Integrative Functional GenomicsDP2OD002750 · OD · DANA-FARBER CANCER INST · PI GARRAWAY, LEVI ALEXANDER · 2007 to 2007
$2.6M
High-Throughput Tumor Genomic Profiling by Massively Parallel SequencingR33CA155554 · NCI · DANA-FARBER CANCER INST · PI GARRAWAY, LEVI A., MACCONAILL, LAURA E · 2011 to 2013
$717k
NCI NIH HHS P01 CA163222NCI NIH HHS P01 CA163222 01A1NCI NIH HHS P50 CA093683NCI NIH HHS P50 CA 93683NCI NIH HHS R33 CA155554NCI NIH HHS T32 CA009172NCRR NIH HHS UL1 RR 025758NCRR NIH HHS UL1 RR025758NHGRI NIH HHS 5U54HG003067-11NHGRI NIH HHS U54 HG003067NIGMS NIH HHS T32 GM007753NIGMS NIH HHS T32GM07753NIH HHS DP2 OD002750
6 · The paper itself

Abstract

Most patients with BRAF(V600)-mutant metastatic melanoma develop resistance to selective RAF kinase inhibitors. The spectrum of clinical genetic resistance mechanisms to RAF inhibitors and options for salvage therapy are incompletely understood. We performed whole-exome sequencing on formalin-fixed, paraffin-embedded tumors from 45 patients with BRAF(V600)-mutant metastatic melanoma who received vemurafenib or dabrafenib monotherapy. Genetic alterations in known or putative RAF inhibitor resistance genes were observed in 23 of 45 patients (51%). Besides previously characterized alterations, we discovered a "long tail" of new mitogen-activated protein kinase (MAPK) pathway alterations (MAP2K2, MITF) that confer RAF inhibitor resistance. In three cases, multiple resistance gene alterations were observed within the same tumor biopsy. Overall, RAF inhibitor therapy leads to diverse clinical genetic resistance mechanisms, mostly involving MAPK pathway reactivation. Novel therapeutic combinations may be needed to achieve durable clinical control of BRAF(V600)-mutant melanoma. Integrating clinical genomics with preclinical screens may model subsequent resistance studies.

Indexed as

Antineoplastic AgentsCell Line, TumorDrug Resistance, NeoplasmExomeFemaleHEK293 CellsHumansImidazolesIndolesMaleMAP Kinase Kinase 1MAP Kinase Kinase 2MelanomaMiddle AgedMutationNeoplasm MetastasisAntineoplastic AgentsBRAF protein, humandabrafenibImidazolesIndolesMAP2K1 protein, humanMAP2K2 protein, humanMAP Kinase Kinase 1MAP Kinase Kinase 2OximesPhosphatidylinositol 3-KinasesPhosphoinositide-3 Kinase InhibitorsProtein Kinase InhibitorsProto-Oncogene Proteins B-rafSulfonamidesVemurafenib

Identifiers

PMID24265153
PMCPMC3947264

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.