Evidence map›Paper›PMID 24264139›Full record

SynthesisJAMA ophthalmology2014

Common mechanisms underlying refractive error identified in functional analysis of gene lists from genome-wide association study results in 2 European British cohorts.

Pirro G Hysi, Omar A Mahroo, Phillippa Cumberland, Robert Wojciechowski, Katie M Williams, Terri L Young, David A Mackey, Jugnoo S Rahi, Christopher J Hammond

Abstract readMeta-Analysis
In one paragraph

Synthesis in JAMA ophthalmology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Journal of medical genetics · 2023
    Article
  4. Intermixing theGenes · 2021
    Review
  5. Article
  6. IMI - Myopia Genetics Report.Investigative ophthalmology & visual science · 2019
    Review
  7. Article
  8. Topical Atropine in the Control of Myopia.Medical hypothesis, discovery & innovation ophthalmology journal · 2016
    Review
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Pirro G HysiDepartment of Twin Research and Genetic Epidemiology, King's College London, London, England.
Omar A MahrooDepartment of Ophthalmology, King's College London, London, England3Department of Physiology, Development, and Neuroscience, University of Cambridge, Cambridge, England.
Phillippa CumberlandCentre for Paediatric Epidemiology and Biostatistics, Institute of Child Health, University College London, London, England.
Robert WojciechowskiJohns Hopkins Bloomberg School of Public Health, Baltimore, Maryland.
Katie M WilliamsDepartment of Ophthalmology, King's College London, London, England.
Terri L YoungCenter for Human Genetics, Duke University Medical Center, Durham, North Carolina.
David A MackeyLions Eye Institute, University of Western Australia, Centre for Ophthalmology and Visual Science, Perth, Australia.
Jugnoo S RahiCentre for Paediatric Epidemiology and Biostatistics, Institute of Child Health, University College London, London, England.
Christopher J HammondDepartment of Twin Research and Genetic Epidemiology, King's College London, London, England2Department of Ophthalmology, King's College London, London, England.
King's College London · GBUniversity College London · GBDuke University Hospital · USJohns Hopkins University · USLions Eye Institute · AU

Funding

International Collaborative Twin Study of Refractive and Glaucoma EndophenotypesR01EY018246 · NEI · DUKE UNIVERSITY · PI YOUNG, TERRI LOIS · 2007 to 2009
$1.8M
Gene-environment-wide interaction studies of ocular refractionK08EY022943 · NEI · JOHNS HOPKINS UNIVERSITY · PI WOJCIECHOWSKI, ROBERT J. · 2013 to 2017
$776k
Department of Health SRF/01/010Medical Research Council G1001799Medical Research Council MR/K023721/1NEI NIH HHS 1R01EY018246NEI NIH HHS K08 EY022943NEI NIH HHS R01 EY018246Wellcome TrustWellcome Trust 083478
6 · The paper itself

Abstract

importanceTo date, relatively few genes responsible for a fraction of heritability have been identified by means of large genetic association studies of refractive error.

objectiveTo explore the genetic mechanisms that lead to refractive error in the general population. DESIGN, SETTING, AND

participantsGenome-wide association studies were carried out in 2 British population-based independent cohorts (N = 5928 participants) to identify genes moderately associated with refractive error. MAIN OUTCOMES AND MEASURES: Enrichment analyses were used to identify sets of genes overrepresented in both cohorts. Enriched groups of genes were compared between both participating cohorts as a further measure against random noise.

resultsGroups of genes enriched at highly significant statistical levels were remarkably consistent in both cohorts. In particular, these results indicated that plasma membrane (P = 7.64 × 10⁻³⁰), cell-cell adhesion (P = 2.42 × 10⁻¹⁸), synaptic transmission (P = 2.70 × 10⁻¹⁴), calcium ion binding (P = 3.55 × 10⁻¹⁵), and cation channel activity (P = 2.77 × 10⁻¹⁴) were significantly overrepresented in relation to refractive error. CONCLUSIONS AND RELEVANCE: These findings provide evidence that development of refractive error in the general population is related to the intensity of photosignal transduced from the retina, which may have implications for future interventions to minimize this disorder. Pathways connected to the procession of the nerve impulse are major mechanisms involved in the development of refractive error in populations of European origin.

Indexed as

Gene Expression ProfilingGenome-Wide Association StudyCalciumCell AdhesionCell MembraneCohort StudiesDiseases in TwinsFemaleGenetic Predisposition to DiseaseGenotypeHumansMaleMiddle AgedPolymorphism, Single NucleotideRefractive ErrorsSynaptic TransmissionCalcium

Identifiers

PMID24264139
PMCPMC4041328
OpenAlexW2016154898

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.