Evidence map›Paper›PMID 24259314›Full record

ArticleGenome biology and evolution2013

Unexpected genomic variability in clinical and environmental strains of the pathogenic yeast Candida parapsilosis.

Leszek P Pryszcz, Tibor Németh, Attila Gácser, Toni Gabaldón

Abstract read
In one paragraph

Article in Genome biology and evolution, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

  1. Review
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  7. Threats from theMicrobiology and molecular biology reviews : MMBR · 2024
    Review
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  9. Follow the Path: Unveiling an Azole ResistantJournal of fungi (Basel, Switzerland) · 2024
    Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Molecular Investigation of the Fatal BloodstreamInternational journal of molecular sciences · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Leszek P PryszczBioinformatics and Genomics Programme, Centre for Genomic Regulation (CRG), Barcelona, Spain.
Tibor Németh
Attila Gácser
Toni Gabaldón

Funding

European Research Council 310325
6 · The paper itself

Abstract

Invasive candidiasis is the most commonly reported invasive fungal infection worldwide. Although Candida albicans remains the main cause, the incidence of emerging Candida species, such as C. parapsilosis is increasing. It has been postulated that C. parapsilosis clinical isolates result from a recent global expansion of a virulent clone. However, the availability of a single genome for this species has so far prevented testing this hypothesis at genomic scales. We present here the sequence of three additional strains from clinical and environmental samples. Our analyses reveal unexpected patterns of genomic variation, shared among distant strains, that argue against the clonal expansion hypothesis. All strains carry independent expansions involving an arsenite transporter homolog, pointing to the existence of directional selection in the environment, and independent origins of the two clinical isolates. Furthermore, we report the first evidence for the existence of recombination in this species. Altogether, our results shed new light onto the dynamics of genome evolution in C. parapsilosis.

Indexed as

Genetic VariationArsenite Transporting ATPasesBase SequenceCandidaCandidiasis, InvasiveEvolution, MolecularGenome, FungalPhylogenyPolymorphism, Single NucleotideRecombination, GeneticSelection, GeneticSequence Analysis, DNASequence DeletionArsenite Transporting ATPasesCandidagenome comparisonpathogensrecombination

Identifiers

PMID24259314
PMCPMC3879973

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.