Evidence map›Paper›PMID 24256505›Full record

ArticleBiochemistry2013

Improved assays for determining the cytosolic access of peptides, proteins, and their mimetics.

Justin M Holub, Jonathan R Larochelle, Jacob S Appelbaum, Alanna Schepartz

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. In Vitro Assays: Friends or Foes of Cell-Penetrating Peptides.International journal of molecular sciences · 2020
    Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. HOPS-dependent endosomal fusion required for efficient cytosolic delivery of therapeutic peptides and small proteins.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Article
  16. Cell Penetration Profiling Using the Chloroalkane Penetration Assay.Journal of the American Chemical Society · 2018
    Article
  17. Emerging Methods and Design Principles for Cell-Penetrant Peptides.Angewandte Chemie (International ed. in English) · 2018
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Justin M HolubDepartment of Chemistry, Yale University , P.O. Box 208107, New Haven, Connecticut 06520-8107, United States.
Jonathan R Larochelle
Jacob S Appelbaum
Alanna Schepartz

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Predoc Training at the Interface Chemistry and BiologyT32GM067543 · NIGMS · YALE UNIVERSITY · PI CRAWFORD, JASON MICHAEL · 2003 to 2022
$7.4M
Foldamers: Novel Ligands for Diverse Protein SurfacesR01GM074756 · NIGMS · YALE UNIVERSITY · PI SCHEPARTZ, ALANNA · 2005 to 2013
$3.2M
Directing the Mediator Complex: Bivalent approaches to Reconstituting or InhibitiR01CA170741 · NCI · YALE UNIVERSITY · PI SCHEPARTZ, ALANNA, TAATJES, DYLAN J · 2012 to 2016
$1.9M
NCI NIH HHS CA170741NCI NIH HHS R01 CA170741NHLBI NIH HHS F30 HL 09047803NIGMS NIH HHS R01 GM074756NIGMS NIH HHS R01 GM74756NIGMS NIH HHS T32 GM007205NIGMS NIH HHS T32 GM067543NIGMS NIH HHS T32GM067543NIGMS NIH HHS T32GM07205
6 · The paper itself

Abstract

Proteins and other macromolecules that cross biological membranes have great potential as tools for research and next-generation therapeutics. Here, we describe two assays that effectively quantify the cytosolic localization of a number of previously reported peptides and protein domains. One assay, which we call GIGI (glucocorticoid-induced eGFP induction), is an amplified assay that informs on relative cytosolic access without the need for sophisticated imaging equipment or adherent cells. The second, GIGT (glucocorticoid-induced eGFP translocation), is a nonamplified assay that informs on relative cytosolic access and exploits sophisticated imaging equipment to facilitate high-content screens in live cells. Each assay was employed to quantify the cytosolic delivery of several canonical "cell permeable peptides," as well as more recently reported minimally cationic miniature proteins and zinc finger nuclease domains. Our results show definitively that both overall charge as well as charge distribution influence cytosolic access and that small protein domains containing a discrete, helical, penta-Arg motif can dramatically improve the cytosolic delivery of small folded proteins such as zinc finger domains. We anticipate that the assays described herein will prove useful to explore and discover the fundamental physicochemical and genetic properties that influence both the uptake and endosomal release of peptidic molecules and their mimetics.

Indexed as

Biomimetic MaterialsCell Line, TumorCytosolGlucocorticoidsGreen Fluorescent ProteinsHEK293 CellsHeLa CellsHumansModels, MolecularPeptidesenhanced green fluorescent proteinGlucocorticoidsGreen Fluorescent ProteinsPeptides

Identifiers

PMID24256505
PMCPMC4006873

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.