Evidence map›Paper›PMID 24251762›Full record

ArticleJournal of proteome research2014

A highly sensitive targeted mass spectrometric assay for quantification of AGR2 protein in human urine and serum.

Tujin Shi, Yuqian Gao, Sue Ing Quek, Thomas L Fillmore, Carrie D Nicora, Dian Su, Rui Zhao, Jacob Kagan, Sudhir Srivastava, Karin D Rodland and 6 more

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 127 citations in OpenAlex.

  1. Review
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  8. Urinary Protein and Peptide Markers in Chronic Kidney Disease.International journal of molecular sciences · 2021
    Review
  9. Article
  10. Article
  11. Review
  12. From development to cancer - an ever-increasing role of AGR2.American journal of cancer research · 2021
    Review
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  14. Article
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  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 1 country.

Tujin ShiBiological Sciences Division, Pacific Northwest National Laboratory , Richland, Washington 99352.
Yuqian Gao
Sue Ing Quek
Thomas L Fillmore
Carrie D Nicora
Dian Su
Rui Zhao
Jacob Kagan
Sudhir Srivastava
Karin D Rodland
Tao Liu
Richard D Smith
Daniel W Chan
David G Camp
Alvin Y Liu
Wei-Jun Qian
Pacific Northwest National Laboratory · USNational Cancer Institute · USUniversity of Washington · USEnvironmental Molecular Sciences Laboratory · USJohns Hopkins University · US

Funding

Equipment Supplement Request for a Research Resource for Ultra-sensitive High Throughput ProteomicsP41GM103493 · NIGMS · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2012 to 2022
$22.6M
PNNL Clinical Proteome Characterization CenterU24CA160019 · NCI · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI RODLAND, KARIN D, SMITH, RICHARD D · 2011 to 2016
$15.7M
The Early Detection Research Network: Biomarker Developmental LaboratoriesU01CA111244 · NCI · UNIVERSITY OF WASHINGTON · PI LIU, ALVIN Y · 2004 to 2015
$4.1M
A Universal Multiplex Assay System for High-Throughput Clinical ApplicationsDP2OD006668 · OD · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI QIAN, WEI-JUN · 2009 to 2009
$2.1M
Biospecimen preparation technologies to enable high throughput and highly sensitiR21CA174581 · NCI · UNIVERSITY OF WASHINGTON · PI LAI, JAMES · 2013 to 2015
$692k
Cancer Research UK C4639/A12330NCI NIH HHS R21 CA174581NCI NIH HHS U01 CA111244NCI NIH HHS U24 CA160019NIGMS NIH HHS P41 GM103493NIH HHS DP2 OD006668
6 · The paper itself

Abstract

Anterior gradient 2 (AGR2) is a secreted, cancer-associated protein in many types of epithelial cancer cells. We developed a highly sensitive targeted mass spectrometric assay for quantification of AGR2 in urine and serum. Digested peptides from clinical samples were processed by PRISM (high pressure and high resolution separations coupled with intelligent selection and multiplexing), which incorporates high pH reversed-phase liquid chromatography (LC) separations to fractionate and select target fractions for follow-on LC-selected reaction monitoring (LC-SRM) analyses. The PRISM-SRM assay for AGR2 showed a reproducibility of <10% CV and limit of quantification (LOQ) values of ∼130 pg/mL in serum and ∼10 pg per 100 μg of total protein mass in urine, respectively. A good correlation (R(2) = 0.91) was observed for the measurable AGR2 concentrations in urine between SRM and enzyme-linked immunosorbent assay (ELISA). On the basis of an initial cohort of 37 subjects, urinary AGR2/PSA concentration ratios showed a significant difference (P = 0.026) between noncancer and cancer. Large clinical cohort studies are needed for the validation of AGR2 as a useful diagnostic biomarker for prostate cancer. Our work validated the approach of identifying candidate secreted protein biomarkers through genomics and measurement by targeted proteomics, especially for proteins where no immunoassays are available.

Indexed as

Amino Acid SequenceCalibrationChromatography, Reverse-PhaseHumansHydrogen-Ion ConcentrationLimit of DetectionMass SpectrometryMolecular Sequence DataMucoproteinsOncogene ProteinsProteinsAGR2 protein, humanMucoproteinsOncogene ProteinsProteins

Identifiers

PMID24251762
PMCPMC3975687
OpenAlexW1999981067

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.