Evidence map›Paper›PMID 24251353›Full record

ArticleMolecular ecology2014

Molecular epidemiology of Rabbit Haemorrhagic Disease Virus in Australia: when one became many.

John Kovaliski, Ron Sinclair, Greg Mutze, David Peacock, Tanja Strive, Joana Abrantes, Pedro J Esteves, Edward C Holmes

Abstract read
In one paragraph

Article in Molecular ecology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

John KovaliskiNRM Biosecurity, Biosecurity South Australia, PO Box 1671, Adelaide, SA, 5001, Australia.
Ron SinclairNRM Biosecurity, Biosecurity South Australia, PO Box 1671, Adelaide, SA, 5001, Australia.
Greg MutzeNRM Biosecurity, Biosecurity South Australia, PO Box 1671, Adelaide, SA, 5001, Australia.
David PeacockNRM Biosecurity, Biosecurity South Australia, PO Box 1671, Adelaide, SA, 5001, Australia.
Tanja StriveInvasive Animals Cooperative Research Centre, University of Canberra, Canberra, ACT, 2601, Australia.
Joana AbrantesCIBIO/UP Centro de Investigação em Biodiversidade e Recursos Genéticos/Universidade do Porto, InBio, Laboratório Associado, Campus Agrário de Vairão, R. Padre Armando Quintas, 4485-661, Vairão, Portugal.
Pedro J EstevesINSERM, U892, Université de Nantes, Nantes, France.
Edward C HolmesMarie Bashir Institute for Infectious Diseases and Biosecurity, School of Biological Sciences and Sydney Medical School, The University of Sydney, Sydney, NSW, 2006, Australia.

Funding

Genomic analysis of the canonical case of virulence evolution: Myxomatosis in AuR01AI093804 · NIAID · PENNSYLVANIA STATE UNIVERSITY, THE · PI READ, ANDREW F. · 2012 to 2016
$2.7M
NIAID NIH HHS R01 AI093804NIAID NIH HHS R01 AI093804-01A1
6 · The paper itself

Abstract

Rabbit Haemorrhagic Disease Virus (RHDV) was introduced into Australia in 1995 as a biological control agent against the wild European rabbit (Oryctolagus cuniculus). We evaluated its evolution over a 16-year period (1995-2011) by examining 50 isolates collected throughout Australia, as well as the original inoculum strains. Phylogenetic analysis of capsid protein VP60 sequences of the Australian isolates, compared with those sampled globally, revealed that they form a monophyletic group with the inoculum strains (CAPM V-351 and RHDV351INOC). Strikingly, despite more than 3000 rereleases of RHDV351INOC since 1995, only a single viral lineage has sustained its transmission in the long-term, indicative of a major competitive advantage. In addition, we find evidence for widespread viral gene flow, in which multiple lineages entered individual geographic locations, resulting in a marked turnover of viral lineages with time, as well as a continual increase in viral genetic diversity. The rate of RHDV evolution recorded in Australia -4.0 (3.3-4.7) × 10(-3) nucleotide substitutions per site per year - was higher than previously observed in RHDV, and evidence for adaptive evolution was obtained at two VP60 residues. Finally, more intensive study of a single rabbit population (Turretfield) in South Australia provided no evidence for viral persistence between outbreaks, with genetic diversity instead generated by continual strain importation.

Indexed as

Evolution, MolecularAnimalsAustraliaCaliciviridae InfectionsGene FlowGenetic MarkersGenetic VariationHemorrhagic Disease Virus, RabbitMolecular EpidemiologyMolecular Sequence DataPhylogenyRabbitsRNA, ViralSequence Analysis, DNAViral Structural Proteinsadenovirus associated RNAGenetic MarkersRNA, Viralviral protein 60, rabbit hemorrhagic disease virusViral Structural ProteinsbiocontrolepidemiologyEuropean rabbitevolutionphylogenyRabbit Haemorrhagic Disease Virus

Identifiers

PMID24251353
PMCPMC4595043

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.