Evidence map›Paper›PMID 24249226›Full record

ArticleRNA (New York, N.Y.)2014

tRNA 3' processing in yeast involves tRNase Z, Rex1, and Rrp6.

Ewa Skowronek, Pawel Grzechnik, Bettina Späth, Anita Marchfelder, Joanna Kufel

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Gle1 is required for tRNA to stimulate Dbp5 ATPase activitybioRxiv : the preprint server for biology · 2023
    Article
  5. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  6. Article
  7. Article
  8. Review
  9. Records of RNA locations in living yeast revealed through covalent marks.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Single-nucleotide control of tRNA folding cooperativity under near-cellular conditions.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  11. Article
  12. Article
  13. TheRNA (New York, N.Y.) · 2018
    Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Ewa Skowronek
Pawel Grzechnik
Bettina Späth
Anita Marchfelder
Joanna Kufel
University of Warsaw · PLUniversität Ulm · DE

Funding

Wellcome Trust
6 · The paper itself

Abstract

Mature tRNA 3' ends in the yeast Saccharomyces cerevisiae are generated by two pathways: endonucleolytic and exonucleolytic. Although two exonucleases, Rex1 and Rrp6, have been shown to be responsible for the exonucleolytic trimming, the identity of the endonuclease has been inferred from other systems but not confirmed in vivo. Here, we show that the yeast tRNA 3' endonuclease tRNase Z, Trz1, is catalyzing endonucleolytic tRNA 3' processing. The majority of analyzed tRNAs utilize both pathways, with a preference for the endonucleolytic one. However, 3'-end processing of precursors with long 3' trailers depends to a greater extent on Trz1. In addition to its function in the nucleus, Trz1 processes the 3' ends of mitochondrial tRNAs, contributing to the general RNA metabolism in this organelle.

Indexed as

Cell NucleusEndoribonucleasesExoribonucleasesExosome Multienzyme Ribonuclease ComplexGene SilencingMetabolic Networks and PathwaysMitochondriaOrganisms, Genetically ModifiedRNARNA 3' End ProcessingRNA, MitochondrialRNA, TransferSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsEndoribonucleasesExoribonucleasesExosome Multienzyme Ribonuclease ComplexRex1 exonuclease, S cerevisiaeRNARNA, MitochondrialRNA, TransferRRP6 protein, S cerevisiaeSaccharomyces cerevisiae ProteinstRNase Z, S cerevisiae3′-end processingexonucleasesSaccharomyces cerevisiaetRNAtRNase Z

Identifiers

PMID24249226
PMCPMC3866640
OpenAlexW1983487158

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.