Evidence map›Paper›PMID 24248638›Full record

ArticleJournal of medical virology2014

The evolution of HIV-1 group M genetic variability in Southern Cameroon is characterized by several emerging recombinant forms of CRF02_AG and viruses with drug resistance mutations.

Lucy Agyingi, Luzia M Mayr, Thompson Kinge, George Enow Orock, Johnson Ngai, Bladine Asaah, Mbida Mpoame, Indira Hewlett, Phillipe Nyambi

Open access · hybridAbstract read
In one paragraph

Article in Journal of medical virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 2 countries.

Lucy AgyingiFaculty of Science, University of Dschang, West Region, Cameroon; Department of Pathology, New York University School of Medicine, New York, New York.
Luzia M Mayr
Thompson Kinge
George Enow Orock
Johnson Ngai
Bladine Asaah
Mbida Mpoame
Indira Hewlett
Phillipe Nyambi
Ministry of Scientific Research and Innovation · CMNew York University · USCenter for Biologics Evaluation and Research · USLimbe Provincial Hospital · CMUniversité de Dschang · CMUniversity of Buea · CMVA NY Harbor Healthcare System · US

Funding

TRAINING PROGRAM IN TB AND HIV PREVENTION AND TREATMENTD43TW001409 · FIC · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LAAL, SUMAN · 2000 to 2011
$4.6M
Viral Evolution and Humoral Immune Response to Dual HIV-1 InfectionR01AI083142 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI GORNY, MIROSLAW K · 2010 to 2015
$2.6M
Improving Research Capacity in Cameroon for Studies on HIV-Associated MalignanciesD43CA153726 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NYAMBI, PHILLIPE N · 2010 to 2014
$2.0M
Viral Evolution and Humoral Immune Response to Dual HIV-1 InfectionR56AI083142 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NYAMBI, PHILLIPE N · 2009 to 2009
$407k
FIC NIH HHS D43 TW001409FIC NIH HHS TW001409NCI NIH HHS CA153726NCI NIH HHS D43 CA153726NIAID NIH HHS AI083142NIAID NIH HHS R01 AI083142NIAID NIH HHS R56 AI083142
6 · The paper itself

Abstract

The HIV epidemic in Cameroon is marked by a broad genetic diversity dominated by circulating recombinant forms (CRFs). Studies performed more than a decade ago in urban settings of Southern Cameroon revealed a dominance of the CRF02_AG and clade A variants in >90% of the infected subjects; however, little is known about the evolving viral variants circulating in this region. To document circulating HIV viral diversity, four regions of the viral genome (gag, PR, reverse transcriptase, env) in 116 HIV-1 positive individuals in Limbe, Southern Cameroon, were PCR-amplified. Sequences obtained at the RT and protease regions were analyzed for mutations that conferred drug resistance using the Stanford Drug Resistance Database. The present study reveals a broad genetic diversity characterized by several unique recombinant forms (URF) accounting for 36% of infections, 48.6% of patients infected with CRF02_AG, and the emergence of CRF22_01A1 in 7.2% of patients. Three out of 15 (20%) treated patients and 13 out of 93 (13.9%) drug naïve patients harbor drug resistance mutations to RT inhibitors, while 3.2% of drug naïve patients harbor drug resistance mutations associated with protease inhibitors. The high proportion (13.9%) of drug resistance mutations among the drug naïve patients reveals the ongoing transmission of these viruses in this region of Cameroon and highlights the need for drug resistance testing before starting treatment for patients infected with HIV-1.

Indexed as

Drug Resistance, ViralEvolution, MolecularMutationRecombination, GeneticAdolescentAdultAgedCameroonFemaleGenetic VariationGenotypeHIV-1HIV InfectionsHuman Immunodeficiency Virus ProteinsHumansMaleHuman Immunodeficiency Virus ProteinsRNA, ViralCameroondrug resistance mutationsgenetic diversityunique recombinant forms

Identifiers

PMID24248638
PMCPMC4011137
OpenAlexW1510261777

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.