Evidence map›Paper›PMID 24248595›Full record

ArticleMolecular and cellular biology2014

A highly conserved region within H2B is important for FACT to act on nucleosomes.

Suting Zheng, J Brooks Crickard, Abhinaya Srikanth, Joseph C Reese

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. DNA Repair in Nucleosomes: Insights from Histone Modifications and Mutants.International journal of molecular sciences · 2024
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Suting ZhengDepartment of Biochemistry and Molecular Biology, Center for Eukaryotic Gene Regulation, Penn State University, University Park, Pennsylvania, USA.
J Brooks Crickard
Abhinaya Srikanth
Joseph C Reese
Pennsylvania State University · US

Funding

REGULATION OF DNA DAMAGE INDUCED GENES BY YEAST TAFIISR01GM058672 · NIGMS · PENNSYLVANIA STATE UNIVERSITY-UNIV PARK · PI REESE, JOSEPH C · 1999 to 2019
$6.5M
NIGMS NIH HHS GM58672NIGMS NIH HHS R01 GM058672
6 · The paper itself

Abstract

Histone N-terminal tails play crucial roles in chromatin-related processes. The tails of histones H3 and H4 are highly conserved and well characterized, but much less is known about the functions of the tails of histones H2A and H2B and their sequences are more divergent among eukaryotes. Here we characterized the function of the only highly conserved region in the H2B tail, the H2B repression (HBR) domain. Once thought to play a role only in repression, it also has an uncharacterized function in gene activation and DNA damage responses. We report that deletion of the HBR domain impairs the eviction of nucleosomes at the promoters and open reading frames of genes. A closer examination of the HBR domain mutants revealed that they displayed phenotypes similar to those of histone chaperone complex FACT mutants, including an increase in intragenic transcription and the accumulation of free histones in cells. Biochemical characterization of recombinant nucleosomes indicates that deletion of the HBR domain impairs FACT-dependent removal of H2A-H2B from nucleosomes, suggesting that the HBR domain plays an important role in allowing FACT to disrupt dimer-DNA interactions. We have uncovered a previously unappreciated role for the HBR domain in regulating chromatin structure and have provided insight into how FACT acts on nucleosomes.

Indexed as

Adenosine TriphosphatasesBinding SitesBlotting, NorthernDNA-Binding ProteinsGalactokinaseGene Expression Regulation, FungalHigh Mobility Group ProteinsHistonesHumansImmunoblottingMutationNucleosomesPromoter Regions, GeneticProtein BindingProtein MultimerizationReverse Transcriptase Polymerase Chain ReactionAdenosine TriphosphatasesDNA-Binding ProteinsFACT protein, S cerevisiaeGAL1 protein, S cerevisiaeGalactokinaseHigh Mobility Group ProteinsHistonesNucleosomesPOB3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSNF2 protein, S cerevisiaeSPT16 protein, S cerevisiaeTranscriptional Elongation FactorsTranscription Factors

Identifiers

PMID24248595
PMCPMC3911510
OpenAlexW2069700800

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.