Evidence map›Paper›PMID 24247239›Full record

ArticleThe Journal of biological chemistry2014

Molecular basis of ADP inhibition of vacuolar (V)-type ATPase/synthase.

Jun-ichi Kishikawa, Atsuko Nakanishi, Shou Furuike, Masatada Tamakoshi, Ken Yokoyama

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Cryo EM structure of intact rotary HNature communications · 2018
    Article
  5. Article
  6. Article
  7. F-subunit reinforces torque generation in V-ATPase.European biophysics journal : EBJ · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Jun-ichi KishikawaFrom the Department of Molecular Biosciences, Kyoto Sangyo University, Motoyama Kamigamo, Kita-ku, Kyoto 603-8555, Japan.
Atsuko Nakanishi
Shou Furuike
Masatada Tamakoshi
Ken Yokoyama
Kyoto Sangyo University · JPOsaka Medical and Pharmaceutical University · JPTokyo University of Pharmacy and Life Sciences · JP

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
NIGMS NIH HHS P41 GM103311NIGMS NIH HHS P41-GM103311
6 · The paper itself

Abstract

Reduction of ATP hydrolysis activity of vacuolar-type ATPase/synthase (V0V1) as a result of ADP inhibition occurs as part of the normal mechanism of V0V1 of Thermus thermophilus but not V0V1 of Enterococcus hirae or eukaryotes. To investigate the molecular basis for this difference, domain-swapped chimeric V1 consisting of both T. thermophilus and E. hirae enzymes were generated, and their function was analyzed. The data showed that the interaction between the nucleotide binding and C-terminal domains of the catalytic A subunit from E. hirae V1 is central to increasing binding affinity of the chimeric V1 for phosphate, resulting in reduction of the ADP inhibition. These findings together with a comparison of the crystal structures of T. thermophilus V1 with E. hirae V1 strongly suggest that the A subunit adopts a conformation in T. thermophilus V1 different from that in E. hirae V1. This key difference results in ADP inhibition of T. thermophilus V1 by abolishing the binding affinity for phosphate during ATP hydrolysis.

Indexed as

Adenosine DiphosphateAdenosine TriphosphateBacterial ProteinsEnterococcusProtein Structure, TertiaryProtein SubunitsRecombinant Fusion ProteinsSpecies SpecificityThermus thermophilusVacuolar Proton-Translocating ATPasesAdenosine DiphosphateAdenosine TriphosphateBacterial ProteinsProtein SubunitsRecombinant Fusion ProteinsVacuolar Proton-Translocating ATPasesADP InhibitionATP SynthaseF1F0 ATPaseMembrane ProteinsMolecular MotorsVacuolar ATPase

Identifiers

PMID24247239
PMCPMC3879562
OpenAlexW2019897963

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.