Evidence map›Paper›PMID 24247006›Full record

ArticleDevelopmental biology2014

Onset of atonal expression in Drosophila retinal progenitors involves redundant and synergistic contributions of Ey/Pax6 and So binding sites within two distant enhancers.

Qingxiang Zhou, Tianyi Zhang, Jennifer C Jemc, Yiyun Chen, Rui Chen, Ilaria Rebay, Francesca Pignoni

Abstract read
In one paragraph

Article in Developmental biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Using Xenopus to discover new candidate genes involved in BOR and other congenital hearing loss syndromes.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2024
    Review
  2. Patterning of theFrontiers in cell and developmental biology · 2023
    Review
  3. Article
  4. Review
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  9. Review
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  11. Article
  12. Using Xenopus to discover new genes involved in branchiootorenal spectrum disorders.Comparative biochemistry and physiology. Toxicology & pharmacology : CBP · 2015
    Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Qingxiang ZhouDepartment of Ophthalmology, Center for Vision Research, and SUNY Eye Institute, SUNY Upstate Medical University, Syracuse, NY, USA.
Tianyi ZhangDepartment of Ophthalmology, Center for Vision Research, and SUNY Eye Institute, SUNY Upstate Medical University, Syracuse, NY, USA.
Jennifer C JemcBen May Institute for Cancer Research, Chicago University, Chicago, IL, USA.
Yiyun ChenHuman Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Rui ChenHuman Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Ilaria RebayBen May Institute for Cancer Research, Chicago University, Chicago, IL, USA.
Francesca PignoniDepartment of Ophthalmology, Center for Vision Research, and SUNY Eye Institute, SUNY Upstate Medical University, Syracuse, NY, USA; Departments of Biochemistry & Molecular Biology, SUNY Upstate Medical University, Syracuse, NY, USA; Department of Neuroscience & Physiology, SUNY Upstate Medical University, Syracuse, NY, USA. Electronic address: pignonif@upstate.edu.

Funding

Cell-Cell Signaling In Embryonic and Retinal Development-Revised RenewalR01EY012549 · NEI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI Ilaria Rebay · 1999 to 2026
$7.3M
GENETIC CONTROL OF EYE SPECIFICATIONR01EY013167 · NEI · UPSTATE MEDICAL UNIVERSITY · PI PIGNONI, FRANCESCA · 2000 to 2010
$2.9M
Genome-wide Dissection of the Retinal Determination NetworkR01EY016853 · NEI · BAYLOR COLLEGE OF MEDICINE · PI CHEN, RUI · 2005 to 2009
$1.5M
NEI NIH HHS R01 EY012549NEI NIH HHS R01 EY013167NEI NIH HHS R01EY013167NEI NIH HHS R01 EY016853NEI NIH HHS R01EY016853NEI NIH HHS R01EY12549
6 · The paper itself

Abstract

Proneural transcription factors drive the generation of specialized neurons during nervous system development, and their dynamic expression pattern is critical to their function. The activation of the proneural gene atonal (ato) in the Drosophila eye disc epithelium represents a critical step in the transition from retinal progenitor cell to developing photoreceptor neuron. We show here that the onset of ato transcription depends on two distant enhancers that function differently in subsets of retinal progenitor cells. A detailed analysis of the crosstalk between these enhancers identifies a critical role for three binding sites for the Retinal Determination factors Eyeless (Ey) and Sine oculis (So). We show how these sites interact to induce ato expression in distinct regions of the eye field and confirm them to be occupied by endogenous Ey and So proteins in vivo. Our study suggests that Ey and So operate differently through the same 3' cis-regulatory sites in distinct populations of retinal progenitors.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBasic Helix-Loop-Helix ProteinsBinding SitesDNA-Binding ProteinsDrosophilaDrosophila ProteinsEnhancer Elements, GeneticEye ProteinsGreen Fluorescent ProteinsHomeodomain ProteinsIn Situ HybridizationNerve Tissue ProteinsNervous SystemNeuronsPaired Box Transcription Factorsato protein, DrosophilaBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsDrosophila ProteinsEye Proteinsey protein, DrosophilaGreen Fluorescent ProteinsHomeodomain ProteinsNerve Tissue ProteinsPaired Box Transcription FactorsPAX6 protein, humanPAX6 Transcription FactorRepressor ProteinsSo protein, DrosophilaAtoh7Eye specificationMath5NeurogenesisProneural factor

Identifiers

PMID24247006
PMCPMC5223736

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.