Evidence map›Paper›PMID 24247004›Full record

ArticleMedical image analysis2014

Correspondence between fMRI and SNP data by group sparse canonical correlation analysis.

Dongdong Lin, Vince D Calhoun, Yu-Ping Wang

Open access · greenAbstract read
In one paragraph

Article in Medical image analysis, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it, 144 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Confound Controlled Multimodal Neuroimaging Data Fusion and Its Application to Developmental Disorders.IEEE transactions on image processing : a publication of the IEEE Signal Processing Society · 2025
    Article
  5. Article
  6. Multi-Group Tensor Canonical Correlation Analysis.ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine · 2023
    Article
  7. Review
  8. Longitudinal Canonical Correlation Analysis.Journal of the Royal Statistical Society. Series C, Applied statistics · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Deep Generative Analysis for Task-Based Functional MRI Experiments.Proceedings of machine learning research · 2021
    Article
  18. Article
  19. Article
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Dongdong LinBiomedical Engineering Department, Tulane University, New Orleans, LA 70118, USA; Center of Genomics and Bioinformatics, Tulane University, New Orleans, LA 70118, USA. Electronic address: dlin5@tulane.edu.
Vince D CalhounThe Mind Research Network, Department of Electrical and Computer Engineering, University of New Mexico, Albuquerque, NM 87131, USA. Electronic address: vcalhoun@unm.edu.
Yu-Ping WangBiomedical Engineering Department, Tulane University, New Orleans, LA 70118, USA; Center of Genomics and Bioinformatics, Tulane University, New Orleans, LA 70118, USA; Center for Systems Biomedicine, Shanghai University for Science and Technology, Shanghai, China. Electronic address: wyp@tulane.edu.
Mind Research Network · USShanghai University · CNTulane University · US

Funding

Multivariate methods for identifying multitask/multimodal brain imaging biomarkersR01EB006841 · NIBIB · THE MIND RESEARCH NETWORK · PI VINCE D CALHOUN, Sergey Plis · 2007 to 2026
$9.8M
Informed Data-Driven Fusion of Behavior, Brain Function, and GenesR01EB005846 · NIBIB · THE MIND RESEARCH NETWORK · PI CALHOUN, VINCE D · 2005 to 2016
$5.5M
Unified multivariate data-driven solutions for static and dynamic brain connectivityR01EB020407 · NIBIB · THE MIND RESEARCH NETWORK · PI ADALI, TULAY, CALHOUN, VINCE D · 2015 to 2018
$2.7M
Integration of brain imaging with genomic and epigenomic dataR01MH104680 · NIMH · TULANE UNIVERSITY OF LOUISIANA · PI CALHOUN, VINCE D, DENG, HONG-WEN · 2014 to 2017
$2.1M
Integration of multiscale genomic data for comprehensive analysis of complex diseR01GM109068 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI WANG, YU-PING · 2014 to 2018
$1.6M
A New Paradigm for Integrated Analysis of Multiscale Genomic Imaging DatasetsR21LM010042 · NLM · UNIVERSITY OF MISSOURI KANSAS CITY · PI WANG, YU-PING · 2009 to 2010
$406k
NIBIB NIH HHS R01 EB005846NIBIB NIH HHS R01 EB006841NIBIB NIH HHS R01 EB020407NIGMS NIH HHS R01 GM109068NIMH NIH HHS R01 MH104680NLM NIH HHS R21 LM010042
6 · The paper itself

Abstract

Both genetic variants and brain region abnormalities are recognized as important factors for complex diseases (e.g., schizophrenia). In this paper, we investigated the correspondence between single nucleotide polymorphism (SNP) and brain activity measured by functional magnetic resonance imaging (fMRI) to understand how genetic variation influences the brain activity. A group sparse canonical correlation analysis method (group sparse CCA) was developed to explore the correlation between these two datasets which are high dimensional-the number of SNPs/voxels is far greater than the number of samples. Different from the existing sparse CCA methods (sCCA), our approach can exploit structural information in the correlation analysis by introducing group constraints. A simulation study demonstrates that it outperforms the existing sCCA. We applied this method to the real data analysis and identified two pairs of significant canonical variates with average correlations of 0.4527 and 0.4292 respectively, which were used to identify genes and voxels associated with schizophrenia. The selected genes are mostly from 5 schizophrenia (SZ)-related signalling pathways. The brain mappings of the selected voxles also indicate the abnormal brain regions susceptible to schizophrenia. A gene and brain region of interest (ROI) correlation analysis was further performed to confirm the significant correlations between genes and ROIs.

Indexed as

Polymorphism, Single NucleotideAlgorithmsComputer SimulationGenetic Predisposition to DiseaseGenetic VariationHumansMagnetic Resonance ImagingNeuroimagingReproducibility of ResultsSchizophreniaSensitivity and SpecificityFeature selectionfMRIGroup sparse CCAImaging geneticsSNP

Identifiers

PMID24247004
PMCPMC4007390
OpenAlexW2120572720

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.