ArticlePloS one2013
Transcriptome sequencing and analysis of the fast growing shoots of moso bamboo (Phyllostachys edulis).
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.
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Who cites it
60 citing papers in PubMed, 147 citations in OpenAlex.
- Transcriptomic and proteomic insights into the molecular mechanism underlying cell wall biosynthesis in Moso bamboo (Phyllostachys edulis).Plant cell reports · 2026Article
- Single-nucleus and spatial transcriptomics reveal the cell populations of intercalary meristems in bamboo.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- Development and Future Prospects of Bamboo Gene Science.International journal of molecular sciences · 2025Review
- The Transcriptome Analysis Provides New Insights into Signaling for Bamboo Shoot Development of Sympodial Bamboo.Foods (Basel, Switzerland) · 2025Article
- The relationship between growth, anatomical structure, and quality in different parts and stages of edible bamboo shoots of Dendrocalamus latiflorus.BMC plant biology · 2025Article
- Interplay Between Phytohormones and Sugar Metabolism inPlants (Basel, Switzerland) · 2025Review
- Gibberellin-mediated internode elongation in grasses with a focus on bamboo: molecular pathways and regulatory networks.Frontiers in plant science · 2025Review
- Subgenome asymmetry of gibberellins-related genes plays important roles in regulating rapid growth of bamboos.Plant diversity · 2025Article
- Comprehensive analysis of the CPP gene family in Moso bamboo: insights into their role in rapid shoot growth.BMC genomics · 2024Article
- Culm Morphological Analysis in Moso Bamboo Reveals the Negative Regulation of Internode Diameter and Thickness by Monthly Precipitation.Plants (Basel, Switzerland) · 2024Article
- Phylogenomic profiles of whole-genome duplications in Poaceae and landscape of differential duplicate retention and losses among major Poaceae lineages.Nature communications · 2024Article
- Deciphering the regulatory role of PheSnRK genes in Moso bamboo: insights into hormonal, energy, and stress responses.BMC genomics · 2024Article
- Emerging Insights into the Roles of the Rhizome-Culm System in Bamboo Shoot Development through Analysis of Non-Structural Carbohydrate Changes.Plants (Basel, Switzerland) · 2023Article
- Anatomical and Transcriptome Analyses of Moso Bamboo Culm Neck Growth: Unveiling Key Insights.Plants (Basel, Switzerland) · 2023Article
- Single-cell transcriptome atlas reveals spatiotemporal developmental trajectories in the basal roots of moso bamboo (Horticulture research · 2023Article
- Genome-Wide Identification of SPX Family Genes and Functional Characterization ofPlants (Basel, Switzerland) · 2023Article
- Comprehensive profiling of epigenetic modifications in fast-growing Moso bamboo shoots.Plant physiology · 2023Article
- Temporal characterization of biocycles of mycelium-bound composites made from bamboo and Pleurotus ostreatus for indoor usage.Scientific reports · 2022Article
- Photosynthesis, Phytohormone Signaling and Sugar Catabolism in the Culm Sheaths ofPlants (Basel, Switzerland) · 2022Article
- Rapid growth of Moso bamboo (Phyllostachys edulis): Cellular roadmaps, transcriptome dynamics, and environmental factors.The Plant cell · 2022Article
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe moso bamboo, a large woody bamboo with the highest ecological, economic, and cultural value of all bamboos, has one of the highest growth speeds in the world. Genetic research into moso bamboo has been scarce, partly because of the lack of previous genomic resources. In the present study, for the first time, we performed de novo transcriptome sequencing and mapped to the moso bamboo genomic resources (reference genome and genes) to produce a comprehensive dataset for the fast growing shoots of moso bamboo.
resultsThe fast growing shoots mixed with six different heights and culms after leaf expansion of moso bamboo transcriptome were sequenced using the Illumina HiSeq™ 2000 sequencing platform, respectively. More than 80 million reads including 65,045,670 and 68,431,884 clean reads were produced in the two libraries. More than 81% of the reads were matched to the reference genome, and nearly 50% of the reads were matched to the reference genes. The genes with log 2 ratio > 2 or < -2 (P<0.001) were characterized as the most differentially expressed genes. 6,076 up-regulated and 4,613 down-regulated genes were classified into functional categories. Candidate genes which mainly involved transcript factors, plant hormones, cell cycle regulation, cell wall metabolism and cell morphogenesis genes were further analyzed and they may form a network that regulates the fast growth of moso bamboo shoots.
conclusionFirstly, our data provides the most comprehensive transcriptomic resource for moso bamboo to date. Candidate genes have been identified and they are potentially involved in the growth and development of moso bamboo. The results give a better insight into the mechanisms of moso bamboo shoots rapid growth and provide gene resources for improving plant growth.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.