Evidence map›Paper›PMID 24244193›Full record

ArticlePLoS genetics2013

Recurrent tissue-specific mtDNA mutations are common in humans.

David C Samuels, Chun Li, Bingshan Li, Zhuo Song, Eric Torstenson, Hayley Boyd Clay, Antonis Rokas, Tricia A Thornton-Wells, Jason H Moore, Tia M Hughes and 5 more

Abstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed.

  1. Article
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  6. Review
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  11. Review
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  14. Review
  15. Review
  16. Roles of Mitochondrial DNA Damage in Kidney Diseases: A New Biomarker.International journal of molecular sciences · 2022
    Review
  17. Article
  18. Article
  19. Mitigation of age-dependent accumulation of defective mitochondrial genomes.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  20. Review

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors.

David C SamuelsCenter for Human Genetics Research, Department of Molecular Physiology & Biophysics, Vanderbilt University School of Medicine, Nashville, Tennessee, United States of America.
Chun Li
Bingshan Li
Zhuo Song
Eric Torstenson
Hayley Boyd Clay
Antonis Rokas
Tricia A Thornton-Wells
Jason H Moore
Tia M Hughes
Robert D Hoffman
Jonathan L Haines
Deborah G Murdock
Douglas P Mortlock
Scott M Williams

Funding

Genetic Studies of Dementia in the AmishR01AG019085 · NIA · VANDERBILT UNIVERSITY · PI HAINES, JONATHAN L · 2001 to 2011
$11.0M
Quantitative Biology Research InstituteP20GM103534 · NIGMS · DARTMOUTH COLLEGE · PI AMOS, CHRISTOPHER I. · 2012 to 2016
$8.6M
Genomic Convergence in Alzheimer DiseaseR01AG027944 · NIA · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI PERICAK-VANCE, MARGARET A. · 2008 to 2012
$5.9M
Bioinformatics Strategies for Genome-Wide Association StudiesR01LM010098 · NLM · UNIVERSITY OF PENNSYLVANIA · PI MOORE, JASON H., WILLIAMS, SCOTT MATTHEW · 2009 to 2023
$5.1M
Training Program on Genetic Variation and Human PhenotypesT32GM080178 · NIGMS · VANDERBILT UNIVERSITY · PI COX, NANCY J, SAMUELS, DAVID C · 2007 to 2021
$3.1M
Developing Statistical Methods for Disease Gene DiscoveryR01HG004517 · NHGRI · VANDERBILT UNIVERSITY · PI LI, CHUN, LI, MINGYAO · 2008 to 2012
$1.9M
Mitochondrial deoxynucleotide metabolism and diseaseR01GM073744 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI SAMUELS, DAVID C · 2007 to 2011
$1.4M
Recruitment of Faculty for Genetic Aging ResearchP30AG036445 · NIA · VANDERBILT UNIVERSITY · PI HAINES, JONATHAN L · 2009 to 2010
$977k
NHGRI NIH HHS R01 HG004517NHGRI NIH HHS R01HG004517NIA NIH HHS 1P30AG036445NIA NIH HHS AG019085NIA NIH HHS AG027944NIA NIH HHS P30 AG036445NIA NIH HHS R01 AG019085NIA NIH HHS R01 AG027944NIGMS NIH HHS GM103534NIGMS NIH HHS P20 GM103534NIGMS NIH HHS R01 GM073744NIGMS NIH HHS R01GM073744NIGMS NIH HHS T32 GM080178NLM NIH HHS LM010098NLM NIH HHS R01 LM010098
6 · The paper itself

Abstract

Mitochondrial DNA (mtDNA) variation can affect phenotypic variation; therefore, knowing its distribution within and among individuals is of importance to understanding many human diseases. Intra-individual mtDNA variation (heteroplasmy) has been generally assumed to be random. We used massively parallel sequencing to assess heteroplasmy across ten tissues and demonstrate that in unrelated individuals there are tissue-specific, recurrent mutations. Certain tissues, notably kidney, liver and skeletal muscle, displayed the identical recurrent mutations that were undetectable in other tissues in the same individuals. Using RFLP analyses we validated one of the tissue-specific mutations in the two sequenced individuals and replicated the patterns in two additional individuals. These recurrent mutations all occur within or in very close proximity to sites that regulate mtDNA replication, strongly implying that these variations alter the replication dynamics of the mutated mtDNA genome. These recurrent variants are all independent of each other and do not occur in the mtDNA coding regions. The most parsimonious explanation of the data is that these frequently repeated mutations experience tissue-specific positive selection, probably through replication advantage.

Indexed as

Genome, MitochondrialBase SequenceDNA, MitochondrialDNA ReplicationHumansMitochondriaMuscle, SkeletalMutationOrgan SpecificityPolymorphism, Restriction Fragment LengthDNA, Mitochondrial

Identifiers

PMID24244193
PMCPMC3820769

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.