Evidence map›Paper›PMID 24244151›Full record

ArticlePLoS pathogens2013

Can non-lytic CD8+ T cells drive HIV-1 escape?

Nafisa-Katrin Seich Al Basatena, Konstantinos Chatzimichalis, Frederik Graw, Simon D W Frost, Roland R Regoes, Becca Asquith

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 35 citations in OpenAlex.

  1. Spatially structured models of viral dynamics: a scoping review.Microbiology and molecular biology reviews : MMBR · 2025
    Article
  2. Review
  3. Review
  4. Modelling HIV-1 control and remission.NPJ systems biology and applications · 2024
    Review
  5. Article
  6. Article
  7. CD8Nature communications · 2023
    Article
  8. CD8Immunity · 2023
    Article
  9. Article
  10. Role of CXCR5Frontiers in microbiology · 2022
    Review
  11. The CD8Microbiology and molecular biology reviews : MMBR · 2021
    Review
  12. Article
  13. Article
  14. Towards multiscale modeling of the CD8Wiley interdisciplinary reviews. Systems biology and medicine · 2019
    Review
  15. Review
  16. Mechanisms of CD8European journal of immunology · 2018
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 4 countries.

Nafisa-Katrin Seich Al BasatenaImperial College, London, London, United Kingdom.
Konstantinos Chatzimichalis
Frederik Graw
Simon D W Frost
Roland R Regoes
Becca Asquith
Imperial College London · GBBirkbeck, University of London · GBETH Zurich · CHHeidelberg University · DEUniversity of Cambridge · GB

Funding

Medical Research Council G0601072Medical Research Council G1001052Medical Research Council MR/J007439/1Wellcome TrustWellcome Trust P21261
6 · The paper itself

Abstract

The CD8+ T cell effector mechanisms that mediate control of HIV-1 and SIV infections remain poorly understood. Recent work suggests that the mechanism may be primarily non-lytic. This is in apparent conflict with the observation that SIV and HIV-1 variants that escape CD8+ T cell surveillance are frequently selected. Whilst it is clear that a variant that has escaped a lytic response can have a fitness advantage compared to the wild-type, it is less obvious that this holds in the face of non-lytic control where both wild-type and variant infected cells would be affected by soluble factors. In particular, the high motility of T cells in lymphoid tissue would be expected to rapidly destroy local effects making selection of escape variants by non-lytic responses unlikely. The observation of frequent HIV-1 and SIV escape poses a number of questions. Most importantly, is the consistent observation of viral escape proof that HIV-1- and SIV-specific CD8+ T cells lyse infected cells or can this also be the result of non-lytic control? Additionally, the rate at which a variant strain escapes a lytic CD8+ T cell response is related to the strength of the response. Is the same relationship true for a non-lytic response? Finally, the potential anti-viral control mediated by non-lytic mechanisms compared to lytic mechanisms is unknown. These questions cannot be addressed with current experimental techniques nor with the standard mathematical models. Instead we have developed a 3D cellular automaton model of HIV-1 which captures spatial and temporal dynamics. The model reproduces in vivo HIV-1 dynamics at the cellular and population level. Using this model we demonstrate that non-lytic effector mechanisms can select for escape variants but that outgrowth of the variant is slower and less frequent than from a lytic response so that non-lytic responses can potentially offer more durable control.

Indexed as

Immune EvasionModels, ImmunologicalCD8-Positive T-LymphocytesHIV-1HIV InfectionsHumans

Identifiers

PMID24244151
PMCPMC3828169
OpenAlexW2084871496

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.