ArticlePlant physiology2014
A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms.
Article in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.
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Who cites it
47 citing papers in PubMed, 84 citations in OpenAlex.
- Development of cleaved amplified polymorphic sequence marker for powdery mildew resistance in Korean malting barley using QTL-seq.Frontiers in plant science · 2025Article
- Quantitative Trait Loci Mapping and Comparative Transcriptome Analysis of Fruit Weight (FW) in Watermelon (Genes · 2024Article
- Are cereal grasses a single genetic system?Nature plants · 2024Article
- Genetic characterization of root architectural traits in barley (Frontiers in plant science · 2023Article
- Scripting Analyses of Genomes in Ensembl Plants.Methods in molecular biology (Clifton, N.J.) · 2022Article
- A linkage disequilibrium-based approach to position unmapped SNPs in crop species.BMC genomics · 2021Article
- Efficient construction of a linkage map and haplotypes for Mentha suaveolens using sequence capture.G3 (Bethesda, Md.) · 2021Article
- Long-read sequence assembly: a technical evaluation in barley.The Plant cell · 2021Article
- Gramene 2021: harnessing the power of comparative genomics and pathways for plant research.Nucleic acids research · 2021Article
- Characterisation of barley landraces from Syria and Jordan for resistance to rhynchosporium and identification of diagnostic markers for Rrs1TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Pairing and Exchanging betweenInternational journal of molecular sciences · 2019Article
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- Leaf Variegation and Impaired Chloroplast Development Caused by a Truncated CCT Domain Gene inThe Plant cell · 2019Article
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- Resistance to Rhynchosporium commune in a collection of European spring barley germplasm.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018Article
- Construction of A High-Density Genetic Map and Mapping of Fruit Traits in Watermelon (International journal of molecular sciences · 2018Article
- Genomic approaches for studying crop evolution.Genome biology · 2018Review
- QTL Mapping for Fiber Quality and Yield Traits Based on Introgression Lines Derived from Gossypium hirsutum × G. tomentosum.International journal of molecular sciences · 2018Article
- Fine mapping of the restorer gene Rfp3 from an Iranian primitive rye (Secale cereale L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.Scientific data · 2017Article
Corrections and comments
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Authors and funding
23 authors at 7 institutions in 5 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Barley (Hordeum vulgare) is an important cereal crop and a model species for Triticeae genomics. To lay the foundation for hierarchical map-based sequencing, a genome-wide physical map of its large and complex 5.1 billion-bp genome was constructed by high-information content fingerprinting of almost 600,000 bacterial artificial chromosomes representing 14-fold haploid genome coverage. The resultant physical map comprises 9,265 contigs with a cumulative size of 4.9 Gb representing 96% of the physical length of the barley genome. The reliability of the map was verified through extensive genetic marker information and the analysis of topological networks of clone overlaps. A minimum tiling path of 66,772 minimally overlapping clones was defined that will serve as a template for hierarchical clone-by-clone map-based shotgun sequencing. We integrated whole-genome shotgun sequence data from the individuals of two mapping populations with published bacterial artificial chromosome survey sequence information to genetically anchor the physical map. This novel approach in combination with the comprehensive whole-genome shotgun sequence data sets allowed us to independently validate and improve a previously reported physical and genetic framework. The resources developed in this study will underpin fine-mapping and cloning of agronomically important genes and the assembly of a draft genome sequence.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.