Evidence map›Paper›PMID 24243147›Full record

ArticlePlant molecular biology2014

Transcription factors that directly regulate the expression of CSLA9 encoding mannan synthase in Arabidopsis thaliana.

Won-Chan Kim, Ida-Barbara Reca, Yongsig Kim, Sunchung Park, Michael F Thomashow, Kenneth Keegstra, Kyung-Hwan Han

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Article in Plant molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
  2. Horticulture research · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Glucomannan inGenes · 2022
    Review
  7. Article
  8. Functional Antagonism of WRI1 and TCP20 ModulatesPlants (Basel, Switzerland) · 2022
    Article
  9. Article
  10. Article
  11. Transcriptome Analysis of Seed Weight Plasticity inInternational journal of molecular sciences · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Transcriptome analysis ofPlant methods · 2019
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Won-Chan KimDepartment of Horticulture, Michigan State University, 126 Natural Resources, East Lansing, MI, 48824-1222, USA.
Ida-Barbara Reca
Yongsig Kim
Sunchung Park
Michael F Thomashow
Kenneth Keegstra
Kyung-Hwan Han

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mannans are hemicellulosic polysaccharides that have a structural role and serve as storage reserves during plant growth and development. Previous studies led to the conclusion that mannan synthase enzymes in several plant species are encoded by members of the cellulose synthase-like A (CSLA) gene family. Arabidopsis has nine members of the CSLA gene family. Earlier work has shown that CSLA9 is responsible for the majority of glucomannan synthesis in both primary and secondary cell walls of Arabidopsis inflorescence stems. Little is known about how expression of the CLSA9 gene is regulated. Sequence analysis of the CSLA9 promoter region revealed the presence of multiple copies of a cis-regulatory motif (M46RE) recognized by transcription factor MYB46, leading to the hypothesis that MYB46 (At5g12870) is a direct regulator of the mannan synthase CLSA9. We obtained several lines of experimental evidence in support of this hypothesis. First, the expression of CSLA9 was substantially upregulated by MYB46 overexpression. Second, electrophoretic mobility shift assay (EMSA) was used to demonstrate the direct binding of MYB46 to the promoter of CSLA9 in vitro. This interaction was further confirmed in vivo by a chromatin immunoprecipitation assay. Finally, over-expression of MYB46 resulted in a significant increase in mannan content. Considering the multifaceted nature of MYB46-mediated transcriptional regulation of secondary wall biosynthesis, we reasoned that additional transcription factors are involved in the CSLA9 regulation. This hypothesis was tested by carrying out yeast-one hybrid screening, which identified ANAC041 and bZIP1 as direct regulators of CSLA9. Transcriptional activation assays and EMSA were used to confirm the yeast-one hybrid results. Taken together, we report that transcription factors ANAC041, bZIP1 and MYB46 directly regulate the expression of CSLA9.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsChromatin ImmunoprecipitationElectrophoretic Mobility Shift AssayGlucosyltransferasesGreen Fluorescent ProteinsMannosyltransferasesMicroscopy, ConfocalPlants, Genetically ModifiedPromoter Regions, GeneticProtein BindingRegulatory Sequences, Nucleic AcidTranscription FactorsTwo-Hybrid System TechniquesArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsbZIP1 protein, ArabidopsisCSLA9 protein, ArabidopsisGlucosyltransferasesGreen Fluorescent Proteinsmannan synthetaseMannosyltransferasesMyb46 protein, ArabidopsisNAC041 protein, ArabidopsisTranscription Factors

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.