Evidence map›Paper›PMID 24242335›Full record

ArticleInternational journal of cancer2014

Genetic and epigenetic changes in fibrosis-associated hepatocarcinogenesis in mice.

Grace Chappell, Kristy Kutanzi, Takeki Uehara, Volodymyr Tryndyak, Hue-Hua Hong, Mark Hoenerhoff, Frederick A Beland, Ivan Rusyn, Igor P Pogribny

Abstract read
In one paragraph

Article in International journal of cancer, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
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  3. Review
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  8. Review
  9. Article
  10. DNA methylation profile of liver of mice conceived byJournal of developmental origins of health and disease · 2022
    Article
  11. Article
  12. Review
  13. The DEN and CClCurrent protocols · 2021
    Article
  14. Review
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Grace ChappellDepartment of Environmental Sciences and Engineering, University of North Carolina, Chapel Hill, NC.
Kristy Kutanzi
Takeki Uehara
Volodymyr Tryndyak
Hue-Hua Hong
Mark Hoenerhoff
Frederick A Beland
Ivan Rusyn
Igor P Pogribny

Funding

STOCHASTIC ANALYSIS OF FLOW AND TRANSPORT PHENOMENAP42ES005948 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI FRY, REBECCA · 1992 to 2017
$45.4M
Bioengineering partnership to improve chemical hazard testing paradigmsR01ES015241 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RUSYN, IVAN · 2008 to 2012
$3.1M
Genes, genomes, and genotoxicity: in vivo epigenetic toxicology of 1,3-butadieneR01ES023195 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CRAWFORD, GREGORY E, FUREY, TERRENCE S. · 2013 to 2016
$2.2M
NIEHS NIH HHS P42 ES005948NIEHS NIH HHS R01 ES015241NIEHS NIH HHS R01 ES023195
6 · The paper itself

Abstract

Hepatocellular carcinoma (HCC) is one of the most prevalent cancers and is rising in incidence worldwide. The molecular mechanisms leading to the development of HCC are complex and include both genetic and epigenetic events. To determine the relative contribution of these alterations in liver tumorigenesis, we evaluated epigenetic modifications at both global and gene specific levels, as well as the mutational profile of genes commonly altered in liver tumors. A mouse model of fibrosis-associated liver cancer that was designed to emulate cirrhotic liver, a prevailing disease state observed in most humans with HCC, was used. Tumor and nontumor liver samples from B6C3F1 mice treated with N-nitrosodiethylamine (DEN; a single ip injection of 1 mg/kg at 14 days of age) and carbon tetrachloride (CCl4; 0.2 ml/kg, 2 times/week ip starting at 8 weeks of age for 14 weeks), as well as corresponding vehicle control animals, were analyzed for genetic and epigenetic alterations. H-ras, Ctnnb1 and Hnf1α genes were not mutated in tumors in mice treated with DEN+CCl4 . In contrast, the increased tumor incidence in mice treated with DEN+CCl4 was associated with marked epigenetic changes in liver tumors and nontumor liver tissue, including demethylation of genomic DNA and repetitive elements, a decrease in histone 3 lysine 9 trimethylation (H3K9me3) and promoter hypermethylation and functional downregulation of Riz1, a histone lysine methyltransferase tumor suppressor gene. Additionally, the reduction in H3K9me3 was accompanied by increased expression of long interspersed nucleotide elements 1 and short interspersed nucleotide elements B2, which is an indication of genomic instability. In summary, our results suggest that epigenetic events, rather than mutations in known cancer-related genes, play a prominent role in increased incidence of liver tumors in this mouse model of fibrosis-associated liver cancer.

Indexed as

Epigenesis, GeneticAnimalsbeta CateninCarbon TetrachlorideCarcinoma, HepatocellularCell Transformation, NeoplasticChromatinDiethylnitrosamineDisease Models, AnimalDNA MethylationDown-RegulationGenomic InstabilityHepatocyte Nuclear Factor 1-alphaHistone-Lysine N-MethyltransferaseHistonesLiverbeta CateninCarbon TetrachlorideChromatinCTNNB1 protein, mouseDiethylnitrosamineHepatocyte Nuclear Factor 1-alphaHistone-Lysine N-MethyltransferaseHistonesHnf1a protein, mousePrdm2 protein, mouseProto-Oncogene Proteins p21(ras)Transcription FactorsDNA methylationepigeneticsgeneticshistone lysine methylationliver carcinogenesismouse

Identifiers

PMID24242335
PMCPMC4209252

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.