Evidence map›Paper›PMID 24241692›Full record

ArticleNature immunology2014

The favorable IFNL3 genotype escapes mRNA decay mediated by AU-rich elements and hepatitis C virus-induced microRNAs.

Adelle P McFarland, Stacy M Horner, Abigail Jarret, Rochelle C Joslyn, Eckart Bindewald, Bruce A Shapiro, Don A Delker, Curt H Hagedorn, Mary Carrington, Michael Gale and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
10.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 143 citations in OpenAlex.

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  18. Innate Immunity in Hepatitis C Virus Infection.Cold Spring Harbor perspectives in medicine · 2021
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31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 1 country.

Adelle P McFarlandDepartment of Immunology, University of Washington, Seattle, Washington, USA.
Stacy M Horner1] Department of Immunology, University of Washington, Seattle, Washington, USA. [2].
Abigail JarretDepartment of Immunology, University of Washington, Seattle, Washington, USA.
Rochelle C JoslynDepartment of Immunology, University of Washington, Seattle, Washington, USA.
Eckart BindewaldBasic Science Program, Leidos Biomedical Research, Frederick National Laboratory for Cancer Research, Frederick, Maryland, USA.
Bruce A ShapiroCenter for Cancer Research Nanobiology Program, National Cancer Institute, Frederick, Maryland, USA.
Don A DelkerDivison of Gastroenterology, Hepatology and Nutrition, School of Medicine, University of Utah, Salt Lake City, Utah, USA.
Curt H Hagedorn1] Divison of Gastroenterology, Hepatology and Nutrition, School of Medicine, University of Utah, Salt Lake City, Utah, USA. [2].
Mary Carrington1] Cancer and Inflammation Program, Laboratory of Experimental Immunology, Science Applications International Corporation-Frederick, Frederick National Laboratory for Cancer Research, Frederick, Maryland, USA. [2] Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology and Harvard University, Boston, Massachusetts, USA.
Michael GaleDepartment of Immunology, University of Washington, Seattle, Washington, USA.
Ram SavanDepartment of Immunology, University of Washington, Seattle, Washington, USA.
Seattle University · USUniversity of Washington · USCenter for Cancer Research · USDuke Medical Center · USLeidos (United States) · USScience Applications International Corporation (United States) · USUniversity of Utah · US

Funding

Effects of genetic polymorphism in MHC, KIR, and related loci on human diseaseZIABC010791 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CARRINGTON, MARY N. · 2009 to 2025
$18.2M
Molecular genetics and population studies of the KIR and HLA gene complexesZIABC010792 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CARRINGTON, MARY N. · 2009 to 2025
$7.8M
Mechanisms Of Pathogen Recognition And Innate Immune Control Of Hepatitis C VirusU19AI088778 · NIAID · UNIVERSITY OF WASHINGTON · PI LAU, DARYL T · 2010 to 2014
$4.2M
The Host Response to Hepatitis C VirusR01AI060389 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI GALE, MICHAEL · 2003 to 2012
$3.4M
The Host Response to Hepatitis C VirusR56AI060389 · NIAID · UNIVERSITY OF WASHINGTON · PI GALE, MICHAEL · 2014 to 2014
$494k
Sentinel Pol II RNAs for Measuring RNA Integrity in BiospecimensR21CA148068 · NCI · UNIVERSITY OF UTAH · PI HAGEDORN, CURT H. · 2011 to 2012
$343k
Intramural NIH HHSNCI NIH HHS CA148068NCI NIH HHS R21 CA148068NIAID NIH HHS AI060389NIAID NIH HHS AI88778NIAID NIH HHS R01 AI060389NIAID NIH HHS R56 AI060389NIAID NIH HHS U19 AI088778
6 · The paper itself

Abstract

IFNL3, which encodes interferon-λ3 (IFN-λ3), has received considerable attention in the hepatitis C virus (HCV) field, as many independent genome-wide association studies have identified a strong association between polymorphisms near IFNL3 and clearance of HCV. However, the mechanism underlying this association has remained elusive. In this study, we report the identification of a functional polymorphism (rs4803217) in the 3' untranslated region (UTR) of IFNL3 mRNA that dictated transcript stability. We found that this polymorphism influenced AU-rich element (ARE)-mediated decay (AMD) of IFNL3 mRNA, as well as the binding of HCV-induced microRNAs during infection. Together these pathways mediated robust repression of the unfavorable IFNL3 polymorphism. Our data reveal a previously unknown mechanism by which HCV attenuates the antiviral response and indicate new potential therapeutic targets for HCV treatment.

Indexed as

Polymorphism, Single Nucleotide3' Untranslated RegionsAU Rich ElementsBase SequenceCell Line, TumorFlow CytometryGenotypeHepacivirusHepatitis CHep G2 CellsHost-Pathogen InteractionsHumansInterferon LambdaInterferonsInterleukinsLiver Neoplasms3' Untranslated RegionsInterferon Lambdainterferon-lambda, humanInterferonsInterleukinsMicroRNAsMIRN208 microRNA, humanMIRN499 microRNA, human

Identifiers

PMID24241692
PMCPMC4183367
OpenAlexW2111357931

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.