Evidence map›Paper›PMID 24240475›Full record

ArticleNature cell biology2013

A network of epigenetic regulators guides developmental haematopoiesis in vivo.

Hsuan-Ting Huang, Katie L Kathrein, Abby Barton, Zachary Gitlin, Yue-Hua Huang, Thomas P Ward, Oliver Hofmann, Anthony Dibiase, Anhua Song, Svitlana Tyekucheva and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature cell biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed, 1 pooled it
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 1 synthesis or guideline pooled it, 93 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. HBO1, a MYSTerious KAT and its links to cancer.Biochimica et biophysica acta. Gene regulatory mechanisms · 2024
    Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Learning from Zebrafish Hematopoiesis.Advances in experimental medicine and biology · 2023
    Review
  19. Biological Functions of the KDM2 Family of Histone Demethylases.Advances in experimental medicine and biology · 2023
    Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Hsuan-Ting Huang1] Department of Genetics, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Stem Cell Program and Division of Pediatric Hematology/Oncology, Children's Hospital Boston and Dana-Farber Cancer Institute, Howard Hughes Medical Institute, Boston, Massachusetts 02115, USA [3].
Katie L Kathrein
Abby Barton
Zachary Gitlin
Yue-Hua Huang
Thomas P Ward
Oliver Hofmann
Anthony Dibiase
Anhua Song
Svitlana Tyekucheva
Yi Zhou
Leonard I Zon
Howard Hughes Medical Institute · USHarvard University · USHarvard Stem Cell Institute · US

Funding

CORE--VECTOR PRODUCTIONP30DK056465 · NIDDK · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HEIMFELD, SHELLY · 1999 to 2014
$14.9M
CORE--ZEBRAFISHP30DK049216 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI LAWRENCE, CHRISTIAN · 1999 to 2015
$14.3M
Customized stem cells for clinical application in blood disordersR24DK092760 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI COLLINS, JAMES J, DALEY, GEORGE Q · 2011 to 2018
$10.7M
TRANSFUSION BIOLOGY AND MEDICINET32HL066987 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI JOHN P MANIS · 2001 to 2026
$10.2M
EMBRYONIC HEMATOPOIESISR01HL048801 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI ZON, LEONARD IRA · 1992 to 2016
$5.7M
COMPARATIVE APPROACH TO GLOBIN REGULATION/THALASSEMIAR01DK053298 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI ZON, LEONARD IRA · 1998 to 2012
$3.9M
Epigenetic Regulation of Hematopoietic Stem Cell SpecificationF32DK089876 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI KATHREIN, KATIE L · 2010 to 2010
$50k
Howard Hughes Medical InstituteNHLBI NIH HHS R01 HL048801NHLBI NIH HHS T32 HL066987NIDDK NIH HHS F32 DK089876NIDDK NIH HHS P30 DK049216NIDDK NIH HHS P30 DK056465NIDDK NIH HHS R01 DK053298NIDDK NIH HHS R24 DK092760
6 · The paper itself

Abstract

The initiation of cellular programs is orchestrated by key transcription factors and chromatin regulators that activate or inhibit target gene expression. To generate a compendium of chromatin factors that establish the epigenetic code during developmental haematopoiesis, a large-scale reverse genetic screen was conducted targeting orthologues of 425 human chromatin factors in zebrafish. A set of chromatin regulators was identified that target different stages of primitive and definitive blood formation, including factors not previously implicated in haematopoiesis. We identified 15 factors that regulate development of primitive erythroid progenitors and 29 factors that regulate development of definitive haematopoietic stem and progenitor cells. These chromatin factors are associated with SWI/SNF and ISWI chromatin remodelling, SET1 methyltransferase, CBP-p300-HBO1-NuA4 acetyltransferase, HDAC-NuRD deacetylase, and Polycomb repressive complexes. Our work provides a comprehensive view of how specific chromatin factors and their associated complexes play a major role in the establishment of haematopoietic cells in vivo.

Indexed as

AnimalsChromatinChromatin Assembly and DisassemblyEpigenesis, GeneticErythroid CellsGene Knockdown TechniquesGene Regulatory NetworksHematopoiesisHematopoietic Stem CellsHumansMorpholinosProtein Interaction MapsProtein SubunitsReverse GeneticsZebrafishZebrafish ProteinsChromatinMorpholinosProtein SubunitsZebrafish Proteins

Identifiers

PMID24240475
PMCPMC3959952
OpenAlexW2148351140

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.