Evidence map›Paper›PMID 24240233›Full record

ArticleGenes & development2013

A p53 enhancer region regulates target genes through chromatin conformations in cis and in trans.

Nichole Link, Paula Kurtz, Melissa O'Neal, Gianella Garcia-Hughes, John M Abrams

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Regulation and coordination of the different DNA damage responses inFrontiers in cell and developmental biology · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Molecular biology of the cell · 2019
    Article
  11. P53 and Apoptosis in the Drosophila Model.Advances in experimental medicine and biology · 2019
    Review
  12. Mechanisms of transcriptional regulation by p53.Cell death and differentiation · 2018
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. A distant trophoblast-specific enhancer controls HLA-G expression at the maternal-fetal interface.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Nichole LinkDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, Texas 75390, USA.
Paula Kurtz
Melissa O'Neal
Gianella Garcia-Hughes
John M Abrams
The University of Texas Southwestern Medical Center · US

Funding

Molecular and Genetic Control of Programmed Cell DeathR01GM072124 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI ABRAMS, JOHN M · 2004 to 2016
$4.4M
Universal Determinants of Alcohol - Induced ToxicityR01AA017328 · NIAAA · UT SOUTHWESTERN MEDICAL CENTER · PI ABRAMS, JOHN M · 2007 to 2010
$1.4M
Non-canonical gene regulation through a Drosophila p53 enhancerF31GM108472 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI KURTZ, PAULA SCHLOSSINGER · 2013 to 2016
$120k
Neuronal cell death in a genetic modelF31NS058118 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI LINK, NICHOLE L · 2008 to 2010
$92k
NIAAA NIH HHS R01 AA017328NIAAA NIH HHS R01AA017328NIGMS NIH HHS F31 GM108472NIGMS NIH HHS F31GM108472NIGMS NIH HHS R01 GM072124NIGMS NIH HHS R01GM072124NINDS NIH HHS F31 NS058118NINDS NIH HHS F31NS058118
6 · The paper itself

Abstract

We examined how a p53 enhancer transmits regulatory information in vivo. Using genetic ablation together with digital chromosome conformation capture and fluorescent in situ hybridization, we found that a Drosophila p53 enhancer region (referred to as the p53 response element [p53RE]) physically contacts targets in cis and across the centromere to control stress-responsive transcription at these sites. Furthermore, when placed at ectopic genomic positions, fragments spanning this element re-established chromatin contacts and partially restored target gene regulation to mutants lacking the native p53RE. Therefore, a defined p53 enhancer region is sufficient for long-range chromatin interactions that enable multigenic regulation.

Indexed as

Enhancer Elements, GeneticGene Expression RegulationAnimalsCentromereChromatinDrosophilaProtein BindingStress, PhysiologicalTumor Suppressor Protein p53ChromatinTumor Suppressor Protein p53apoptosischromosome conformation capturegenome architecturelong-distance gene regulationp53

Identifiers

PMID24240233
PMCPMC3841732
OpenAlexW2031401859

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.