Evidence map›Paper›PMID 24240101›Full record

ArticleDevelopmental biology2014

A comparative study of Pointed and Yan expression reveals new complexity to the transcriptional networks downstream of receptor tyrosine kinase signaling.

Jean-François Boisclair Lachance, Nicolás Peláez, Justin J Cassidy, Jemma L Webber, Ilaria Rebay, Richard W Carthew

Abstract readComparative Study
In one paragraph

Article in Developmental biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jean-François Boisclair LachanceBen May Department for Cancer Research, University of Chicago, Chicago, IL 60637, USA; The Chicago Center for Systems Biology, The University of Chicago, Chicago, IL 60637, USA.
Nicolás PeláezDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA; The Chicago Center for Systems Biology, The University of Chicago, Chicago, IL 60637, USA.
Justin J CassidyDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA; The Chicago Center for Systems Biology, The University of Chicago, Chicago, IL 60637, USA.
Jemma L WebberBen May Department for Cancer Research, University of Chicago, Chicago, IL 60637, USA; The Chicago Center for Systems Biology, The University of Chicago, Chicago, IL 60637, USA.
Ilaria RebayBen May Department for Cancer Research, University of Chicago, Chicago, IL 60637, USA; The Chicago Center for Systems Biology, The University of Chicago, Chicago, IL 60637, USA. Electronic address: irebay@uchicago.edu.
Richard W CarthewDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208, USA; The Chicago Center for Systems Biology, The University of Chicago, Chicago, IL 60637, USA. Electronic address: r-carthew@northwestern.edu.
Northwestern University · USUniversity of Chicago · US

Funding

CORE: ADMINISTRATIVEP50GM081892 · NIGMS · UNIVERSITY OF CHICAGO · PI WHITE, KEVIN P. · 2008 to 2013
$15.9M
Function and Regulation of the ETS Transcriptional Repressor Tel-1/YANR01GM080372 · NIGMS · UNIVERSITY OF CHICAGO · PI REBAY, ILARIA · 2007 to 2022
$3.9M
MicroRNA Regulation of Biological MechanismsR01GM077581 · NIGMS · NORTHWESTERN UNIVERSITY · PI CARTHEW, RICHARD W. · 2006 to 2015
$2.9M
Howard Hughes Medical InstituteNIGMS NIH HHS P50 GM081892NIGMS NIH HHS P50GM081892NIGMS NIH HHS R01 GM077581NIGMS NIH HHS R01GM077581NIGMS NIH HHS R01 GM080372NIGMS NIH HHS R01GM80372
6 · The paper itself

Abstract

The biochemical regulatory network downstream of receptor tyrosine kinase (RTK) signaling is controlled by two opposing ETS family members: the transcriptional activator Pointed (Pnt) and the transcriptional repressor Yan. A bistable switch model has been invoked to explain how pathway activation can drive differentiation by shifting the system from a high-Yan/low-Pnt activity state to a low-Yan/high-Pnt activity state. Although the model explains yan and pnt loss-of-function phenotypes in several different cell types, how Yan and Pointed protein expression dynamics contribute to these and other developmental transitions remains poorly understood. Toward this goal we have used a functional GFP-tagged Pnt transgene (Pnt-GFP) to perform a comparative study of Yan and Pnt protein expression throughout Drosophila development. Consistent with the prevailing model of the Pnt-Yan network, we found numerous instances where Pnt-GFP and Yan adopt a mutually exclusive pattern of expression. However we also observed many examples of co-expression. While some co-expression occurred in cells where RTK signaling is presumed low, other co-expression occurred in cells with high RTK signaling. The instances of co-expressed Yan and Pnt-GFP in tissues with high RTK signaling cannot be explained by the current model, and thus they provide important contexts for future investigation of how context-specific differences in RTK signaling, network topology, or responsiveness to other signaling inputs, affect the transcriptional response.

Indexed as

Signal TransductionTranscription, GeneticAnimalsDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsEye ProteinsGreen Fluorescent ProteinsNerve Tissue ProteinsProto-Oncogene ProteinsReceptor Protein-Tyrosine KinasesRepressor ProteinsTranscription FactorsAOP protein, DrosophilaDNA-Binding ProteinsDrosophila ProteinsEye ProteinsGreen Fluorescent ProteinsNerve Tissue Proteinspnt protein, DrosophilaProto-Oncogene ProteinsReceptor Protein-Tyrosine KinasesRepressor ProteinsTranscription FactorsDrosophilaEGFR signalingEmbryoETS transcription factorGene regulationImaginal discs

Identifiers

PMID24240101
PMCPMC3947276
OpenAlexW2091566143

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.