Evidence map›Paper›PMID 24239506›Full record

ReviewThe Journal of steroid biochemistry and molecular biology2014

Fundamentals of vitamin D hormone-regulated gene expression.

J Wesley Pike, Mark B Meyer

Open access · greenAbstract readReview
In one paragraph

Review in The Journal of steroid biochemistry and molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 1 pooled it
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 1 synthesis or guideline pooled it, 137 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Intramammary 25-hydroxyvitamin DJDS communications · 2023
    Article
  14. Article
  15. Review
  16. Vitamin D in Neurological Diseases.International journal of molecular sciences · 2022
    Review
  17. Article
  18. Review
  19. Review
  20. Role of Nuclear Receptors in Controlling Erythropoiesis.International journal of molecular sciences · 2022
    Review

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

J Wesley PikeDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, United States. Electronic address: pike@biochem.wisc.edu.
Mark B MeyerDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53706, United States.
University of Wisconsin–Madison · US

Funding

Molecular Mechanisms of RANKL Activation in OsteoblastsR01DK074993 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI PIKE, J WESLEY · 2007 to 2017
$4.0M
BONE CELL REGULATION OF THE VITAMIN D RECEPTOR GENER01AR045173 · NIAMS · UNIVERSITY OF WISCONSIN-MADISON · PI PIKE, J WESLEY · 1999 to 2015
$3.5M
Dynamic Mechanisms of Vitamin D-Induced Gene ExpressionR01DK072281 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI PIKE, J WESLEY · 2005 to 2012
$2.6M
Vitamin D Ligands and Regulation of Calcium HomeostasisR01DK073995 · NIDDK · UNIVERSITY OF WISCONSIN-MADISON · PI PIKE, J WESLEY · 2008 to 2012
$1.5M
NIAMS NIH HHS AR-45173NIAMS NIH HHS R01 AR045173NIDDK NIH HHS DK-72281NIDDK NIH HHS DK-73995NIDDK NIH HHS DK-74993NIDDK NIH HHS R01 DK072281NIDDK NIH HHS R01 DK073995NIDDK NIH HHS R01 DK074993
6 · The paper itself

Abstract

Initial research focused upon several known genetic targets provided early insight into the mechanism of action of the vitamin D hormone (1,25-dihydroxyvitamin D3 (1,25(OH)2D3)). Recently, however, a series of technical advances involving the coupling of chromatin immunoprecipitation (ChIP) to unbiased methodologies that initially involved tiled DNA microarrays (ChIP-chip analysis) and now Next Generation DNA Sequencing techniques (ChIP-seq analysis) has opened new avenues of research into the mechanisms through which 1,25(OH)2D3 regulates gene expression. In this review, we summarize briefly the results of this early work and then focus on more recent studies in which ChIP-chip and ChIP-seq analyses have been used to explore the mechanisms of 1,25(OH)2D3 action on a genome-wide scale providing specific target genes as examples. The results of this work have advanced our understanding of the mechanisms involved at both genetic and epigenetic levels and have revealed a series of new principles through which the vitamin D hormone functions to control the expression of genes. This article is part of a Special Issue entitled '16th Vitamin D Workshop'.

Indexed as

AnimalsGene Expression RegulationHumansReceptors, CalcitriolTranscription, GeneticVitamin DVitaminsReceptors, CalcitriolVitamin DVitamins1,25(OH)(2)D(3)ChIP-seq methodsEpigeneticsTranscriptionUnbiased genome-wide analysisVDR

Identifiers

PMID24239506
PMCPMC4144817
OpenAlexW2076732626

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.