Evidence map›Paper›PMID 24236510›Full record

ArticleBiochemistry2013

N-terminus of IpaB provides a potential anchor to the Shigella type III secretion system tip complex protein IpaD.

Nicholas E Dickenson, Olivia Arizmendi, Mrinalini K Patil, Ronald T Toth, C Russell Middaugh, William D Picking, Wendy L Picking

Abstract read
In one paragraph

Article in Biochemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 34 citations in OpenAlex.

  1. Multifunctional antibody responses from a primateScience translational medicine · 2026
    Article
  2. Article
  3. Article
  4. Toward aInternational journal of molecular sciences · 2023
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. TheMicroorganisms · 2021
    Review
  10. Review
  11. The T3SS ofMicroorganisms · 2020
    Review
  12. Article
  13. The type III secretion system needle, tip, and translocon.Protein science : a publication of the Protein Society · 2019
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Single-domain antibodies pinpoint potential targets withinThe Journal of biological chemistry · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Nicholas E DickensonDepartment of Chemistry and Biochemistry, Utah State University , Logan, Utah 84322, United States.
Olivia Arizmendi
Mrinalini K Patil
Ronald T Toth
C Russell Middaugh
William D Picking
Wendy L Picking
Oklahoma State University · USUniversity of Kansas · USUtah State University · US

Funding

The multiple states of IpaB Shigella type III secretionR01AI099489 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI PICKING, WILLIAM D. · 2013 to 2017
$2.2M
Control of Type III secretion in Shigella by lpaDR01AI067858 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI PICKING, WENDY L. · 2007 to 2011
$1.9M
A Mechanism for Shigella Type III Secretion ActivationR21AI090149 · NIAID · OKLAHOMA STATE UNIVERSITY STILLWATER · PI PICKING, WILLIAM D. · 2010 to 2011
$407k
Lipid raft effects on Shigella type III secretion system-based interactionsK22AI099086 · NIAID · UTAH STATE UNIVERSITY · PI DICKENSON, NICHOLAS E · 2013 to 2014
$268k
NIAID NIH HHS K22 AI099086NIAID NIH HHS R01 AI067858NIAID NIH HHS R01 AI099489NIAID NIH HHS R21 AI090149
6 · The paper itself

Abstract

The type III secretion system (T3SS) is an essential virulence factor for Shigella flexneri , providing a conduit through which host-altering effectors are injected directly into a host cell to promote uptake. The type III secretion apparatus (T3SA) is composed of a basal body, external needle, and regulatory tip complex. The nascent needle is a polymer of MxiH capped by a pentamer of invasion plasmid antigen D (IpaD). Exposure to bile salts (e.g., deoxycholate) causes a conformational change in IpaD and promotes recruitment of IpaB to the needle tip. It has been proposed that IpaB senses contact with host cell membranes, recruiting IpaC and inducing full secretion of T3SS effectors. Although the steps of T3SA maturation and their external triggers have been identified, details of specific protein interactions and mechanisms have remained difficult to study because of the hydrophobic nature of the IpaB and IpaC translocator proteins. Here, we explored the ability for a series of soluble N-terminal IpaB peptides to interact with IpaD. We found that DOC is required for the interaction and that a region of IpaB between residues 11-27 is required for maximum binding, which was confirmed in vivo. Furthermore, intramolecular FRET measurements indicated that movement of the IpaD distal domain away from the protein core accompanied the binding of IpaB11-226. Together, these new findings provide important new insight into the interactions and potential mechanisms that define the maturation of the Shigella T3SA needle tip complex and provide a foundation for further studies probing T3SS activation.

Indexed as

Amino Acid SubstitutionAntigens, BacterialBacterial ProteinsBacterial Secretion SystemsDeoxycholic AcidFluorescence Resonance Energy TransferHemolysisModels, MolecularMutagenesis, Site-DirectedPeptide FragmentsProtein BindingProtein Interaction Domains and MotifsProtein Structure, SecondaryShigella flexneriVirulence FactorsAntigens, BacterialBacterial ProteinsBacterial Secretion SystemsDeoxycholic AcidipaB protein, ShigellaIpaD protein, Shigella flexneriPeptide FragmentsVirulence Factors

Identifiers

PMID24236510
PMCPMC3946325
OpenAlexW2050472879

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.