ArticlePloS one2013
Identification of miRNAs and their target genes in peach (Prunus persica L.) using high-throughput sequencing and degradome analysis.
Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- Article
- Predicting candidate miRNAs for targeting begomovirus to induce sequence-specific gene silencing in chilli plants.Frontiers in plant science · 2024Article
- Function identification of miR159a, a positive regulator during poplar resistance to drought stress.Horticulture research · 2023Article
- fIdentification of B. napus small RNAs responsive to infection by a necrotrophic pathogen.BMC plant biology · 2021Article
- Comparative analysis of theOpen life sciences · 2021Article
- Genome-Wide Changes of Regulatory Non-Coding RNAs Reveal Pollen Development Initiated at Ecodormancy in Peach.Frontiers in molecular biosciences · 2021Article
- Genetic Transformation in Peach (Plants (Basel, Switzerland) · 2020Review
- Biology and Function of miR159 in Plants.Plants (Basel, Switzerland) · 2019Review
- Identification and characterization of Prunus persica miRNAs in response to UVB radiation in greenhouse through high-throughput sequencing.BMC genomics · 2017Article
- Identification of Known and Novel microRNAs and Their Targets in Peach (Prunus persica) Fruit by High-Throughput Sequencing.PloS one · 2016Article
- Dormancy-associated MADS-box genes and microRNAs jointly control dormancy transition in pear (Pyrus pyrifolia white pear group) flower bud.Journal of experimental botany · 2016Article
- StarScan: a web server for scanning small RNA targets from degradome sequencing data.Nucleic acids research · 2015Article
- Identification of microRNAs and target genes in the fruit and shoot tip of Lycium chinense: a traditional Chinese medicinal plant.PloS one · 2015Article
- Prunus transcription factors: breeding perspectives.Frontiers in plant science · 2015Review
- Identification of miRNAs involved in pear fruit development and quality.BMC genomics · 2014Article
- Computational identification of conserved microRNAs and their targets from expression sequence tags of blueberry (Vaccinium corybosum).Plant signaling & behavior · 2014Article
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Authors and funding
6 authors.
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Abstract
MicroRNAs play critical roles in various biological and metabolic processes. The function of miRNAs has been widely studied in model plants such as Arabidopsis and rice. However, the number of identified miRNAs and related miRNA targets in peach (Prunus persica) is limited. To understand further the relationship between miRNAs and their target genes during tissue development in peach, a small RNA library and three degradome libraries were constructed from three tissues for deep sequencing. We identified 117 conserved miRNAs and 186 novel miRNA candidates in peach by deep sequencing and 19 conserved miRNAs and 13 novel miRNAs were further evaluated for their expression by RT-qPCR. The number of gene targets that were identified for 26 conserved miRNA families and 38 novel miRNA candidates, were 172 and 87, respectively. Some of the identified miRNA targets were abundantly represented as conserved miRNA targets in plant. However, some of them were first identified and showed important roles in peach development. Our study provides information concerning the regulatory network of miRNAs in peach and advances our understanding of miRNA functions during tissue development.
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