Evidence map›Paper›PMID 24236072›Full record

ArticlePloS one2013

Single, double and quadruple alanine substitutions at oligomeric interfaces identify hydrophobicity as the key determinant of human neutrophil alpha defensin HNP1 function.

Le Zhao, W David Tolbert, Bryan Ericksen, Changyou Zhan, Xueji Wu, Weirong Yuan, Xu Li, Marzena Pazgier, Wuyuan Lu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Endogenous Peptide Inhibitors of HIV Entry.Advances in experimental medicine and biology · 2022
    Article
  6. Antiviral Activities of Human Host Defense Peptides.Current medicinal chemistry · 2020
    Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Le ZhaoTranslational Medicine Center, the First Affiliated Hospital, School of Medicine, Xi'an Jiaotong University, Xi'an, China ; Institute of Human Virology and Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.
W David Tolbert
Bryan Ericksen
Changyou Zhan
Xueji Wu
Weirong Yuan
Xu Li
Marzena Pazgier
Wuyuan Lu
University of Maryland, Baltimore · USFirst Affiliated Hospital of Xi'an Jiaotong University · CN

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
Inhibition of Anthrax Lethal Factor by alpha-defensinsR01AI072732 · NIAID · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI LU, WUYUAN · 2007 to 2011
$2.4M
Molecular Basis of Human Neutrophil alpha-Defensin FunctionR01AI061482 · NIAID · UNIVERSITY OF MD BIOTECHNOLOGY INSTITUTE · PI LU, WUYUAN · 2005 to 2009
$1.8M
NCRR NIH HHS P41 RR001209NCRR NIH HHS P41RR001209NIAID NIH HHS AI061482NIAID NIH HHS AI072732NIAID NIH HHS R01 AI061482NIAID NIH HHS R01 AI072732
6 · The paper itself

Abstract

HNP1 is a human alpha defensin that forms dimers and multimers governed by hydrophobic residues, including Tyr¹⁶, Ile²⁰, Leu²⁵, and Phe²⁸. Previously, alanine scanning mutagenesis identified each of these residues and other hydrophobic residues as important for function. Here we report further structural and functional studies of residues shown to interact with one another across oligomeric interfaces: I20A-HNP1 and L25A-HNP1, plus the double alanine mutants I20A/L25A-HNP1 and Y16A/F28A-HNP1, and the quadruple alanine mutant Y16A/I20A/L25A/F28A-HNP1. We tested binding to HIV-1 gp120 and HNP1 by surface plasmon resonance, binding to HIV-1 gp41 and HNP1 by fluorescence polarization, inhibition of anthrax lethal factor, and antibacterial activity using the virtual colony count assay. Similar to the previously described single mutant W26A-HNP1, the quadruple mutant displayed the least activity in all functional assays, followed by the double mutant Y16A/F28A-HNP1. The effects of the L25A and I20A single mutations were milder than the double mutant I20A/L25A-HNP1. Crystallographic studies confirmed the correct folding and disulfide pairing, and depicted an array of dimeric and tetrameric structures. These results indicate that side chain hydrophobicity is the critical factor that determines activity at these positions.

Indexed as

alpha-DefensinsAmino Acid SubstitutionAnti-Bacterial AgentsAntigens, BacterialBacterial ToxinsCrystallography, X-RayHIV Envelope Protein gp120HIV Envelope Protein gp41HumansHydrophobic and Hydrophilic InteractionsMicrobial Sensitivity TestsMutagenesis, Site-DirectedProtein BindingProtein Interaction Domains and MotifsProtein MultimerizationProtein Structure, Quaternaryalpha-Defensinsanthrax toxinAnti-Bacterial AgentsAntigens, BacterialBacterial Toxinsgp120 protein, Human immunodeficiency virus 1gp41 protein, Human immunodeficiency virus 1HIV Envelope Protein gp120HIV Envelope Protein gp41human neutrophil peptide 1

Identifiers

PMID24236072
PMCPMC3827289
OpenAlexW2085106429

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.