Evidence map›Paper›PMID 24232864›Full record

ArticleModern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc2014

Idiopathic pulmonary fibrosis is strongly associated with productive infection by herpesvirus saimiri.

Virginia A Folcik, Michela Garofalo, Jack Coleman, James J Donegan, Elazar Rabbani, Saul Suster, Allison Nuovo, Cynthia M Magro, Gianpiero Di Leva, Gerard J Nuovo

Open access · hybridAbstract read
In one paragraph

Article in Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 2 pooled it
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 2 syntheses or guidelines pooled it, 42 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Persistent microbial infections and idiopathic pulmonary fibrosis - an insight intoFrontiers in cellular and infection microbiology · 2024
    Review
  4. Review
  5. Review
  6. Review
  7. Evolving Perspectives on Innate Immune Mechanisms of IPF.Frontiers in molecular biosciences · 2021
    Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Role of microbiota on lung homeostasis and diseases.Science China. Life sciences · 2017
    Review
  13. Article
  14. Article
  15. The Lung Microbiome, Immunity, and the Pathogenesis of Chronic Lung Disease.Journal of immunology (Baltimore, Md. : 1950) · 2016
    Review
  16. Viruses in Idiopathic Pulmonary Fibrosis. Etiology and Exacerbation.Annals of the American Thoracic Society · 2015
    Review
  17. Article
  18. Review
  19. Review
  20. Following the path of CCL2 from prostaglandins to periostin in lung fibrosis.American journal of respiratory cell and molecular biology · 2014
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Virginia A Folcik1] The Ohio State University (OSU) at Marion, Marion, OH, USA [2] OSU Computer Science and Engineering, Marion, OH, USA [3] OSU Innovation Group for the Study of Complexity in Human, Natural, and Engineered Systems, Marion, OH, USA.
Michela GarofaloSatellite Laboratory, Ohio State Univ Comprehensive Cancer Center, Powell, Columbus, OH, USA.
Jack ColemanEnzo Biochem, Farmingdale, NY, USA.
James J DoneganEnzo Biochem, Farmingdale, NY, USA.
Elazar RabbaniEnzo Biochem, Farmingdale, NY, USA.
Saul SusterMedical College of Wisconsin, Milwaukee, WI, USA.
Allison NuovoOSU Wexner Medical Center, Columbus, OH, USA.
Cynthia M MagroWeill Cornell Medical Center, New York, NY, USA.
Gianpiero Di LevaSatellite Laboratory, Ohio State Univ Comprehensive Cancer Center, Powell, Columbus, OH, USA.
Gerard J Nuovo1] Satellite Laboratory, Ohio State Univ Comprehensive Cancer Center, Powell, Columbus, OH, USA [2] Phylogeny Inc, Powell, OH, USA.
Enzo Biochem (United States) · USCornell University · USMedical College of Wisconsin · USThe Ohio State University Wexner Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Idiopathic pulmonary fibrosis is a fatal disease without effective therapy or diagnostic test. To investigate a potential role for γ-herpesviruses in this disease, 21 paraffin-embedded lung biopsies from patients diagnosed with idiopathic pulmonary fibrosis and 21 lung biopsies from age-matched controls with pulmonary fibrosis of known etiology were examined for a series of γ-herpesviruses' DNA/RNA and related proteins using in situ hybridization and reverse transcriptase-polymerase chain reaction (RT-PCR)-based methods. We detected four proteins known to be in the genome of several γ-herpesviruses (cyclin D, thymidylate synthase, dihydrofolate reductase, and interleukin-17) that were strongly co-expressed in the regenerating epithelial cells of each of the 21 idiopathic pulmonary fibrosis cases and not in the benign epithelia of the controls. Among the γ-herpesviruses, only herpesvirus saimiri expresses all four of these 'pirated' mammalian proteins. We found herpesvirus saimiri DNA in the regenerating epithelial cells of 21/21 idiopathic pulmonary fibrosis cases using four separate probe sets but not in the 21 controls. RT-PCR showed that the source of the cyclin D RNA in active idiopathic pulmonary fibrosis was herpesvirus saimiri and not human. We cloned and sequenced part of genome corresponding to the DNA polymerase herpesvirus saimiri gene from an idiopathic pulmonary fibrosis sample and it matched 100% with the published viral sequence. These data are consistent with idiopathic pulmonary fibrosis representing herpesvirus saimiri-induced pulmonary fibrosis. Thus, treatment directed against viral proliferation and/or viral-associated proteins may halt disease progression. Further, demonstration of the viral nucleic acids or proteins may help diagnose the disease.

Indexed as

AgedDNA, ViralFemaleHerpesviridae InfectionsHerpesvirus 2, SaimiriineHumansIdiopathic Pulmonary FibrosisIn Situ HybridizationMaleMiddle AgedReverse Transcriptase Polymerase Chain ReactionDNA, Viral

Identifiers

PMID24232864
PMCPMC4050527
OpenAlexW2083878996

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.