Evidence map›Paper›PMID 24225024›Full record

ArticleOpen biology2013

Insight into the HIV-1 Vif SOCS-box-ElonginBC interaction.

Zhisheng Lu, Julien R C Bergeron, R Andrew Atkinson, Torsten Schaller, Dennis A Veselkov, Alain Oregioni, Yi Yang, Stephen J Matthews, Michael H Malim, Mark R Sanderson

Open access · goldAbstract read
In one paragraph

Article in Open biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Structure of the transcribing RNA polymerase II-Elongin complex.Nature structural & molecular biology · 2023
    Article
  4. Review
  5. Structural perspectives on HIV-1 Vif and APOBEC3 restriction factor interactions.Protein science : a publication of the Protein Society · 2020
    Review
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Zhisheng LuRandall Division of Cell and Molecular Biophysics, King's College London, 3rd Floor, New Hunt's House, Guy's Campus, London Bridge, London SE1 1UL, UK.
Julien R C Bergeron
R Andrew Atkinson
Torsten Schaller
Dennis A Veselkov
Alain Oregioni
Yi Yang
Stephen J Matthews
Michael H Malim
Mark R Sanderson
King's College London · GBGuy's Hospital · GBImperial College London · GBNational Institute for Health Research · GB

Funding

Medical Research Council G1000196Medical Research Council G1001081Medical Research Council MC_U117533887Medical Research Council MR/J006874/1Wellcome Trust
6 · The paper itself

Abstract

The HIV-1 viral infectivity factor (Vif) neutralizes cell-encoded antiviral APOBEC3 proteins by recruiting a cellular ElonginB (EloB)/ElonginC (EloC)/Cullin5-containing ubiquitin ligase complex, resulting in APOBEC3 ubiquitination and proteolysis. The suppressors-of-cytokine-signalling-like domain (SOCS-box) of HIV-1 Vif is essential for E3 ligase engagement, and contains a BC box as well as an unusual proline-rich motif. Here, we report the NMR solution structure of the Vif SOCS-ElonginBC (EloBC) complex. In contrast to SOCS-boxes described in other proteins, the HIV-1 Vif SOCS-box contains only one α-helical domain followed by a β-sheet fold. The SOCS-box of Vif binds primarily to EloC by hydrophobic interactions. The functionally essential proline-rich motif mediates a direct but weak interaction with residues 101-104 of EloB, inducing a conformational change from an unstructured state to a structured state. The structure of the complex and biophysical studies provide detailed insight into the function of Vif's proline-rich motif and reveal novel dynamic information on the Vif-EloBC interaction.

Indexed as

Protein Interaction Domains and MotifsAmino Acid SequenceBinding SitesCullin ProteinsElonginHIV-1Models, MolecularNuclear Magnetic Resonance, BiomolecularProlineProtein ConformationProtein FoldingProtein Structure, SecondaryProtein Structure, TertiarySuppressor of Cytokine Signaling ProteinsTranscription Factorsvif Gene Products, Human Immunodeficiency VirusCullin ProteinsELOB protein, humanELOC protein, humanElonginProlineSuppressor of Cytokine Signaling ProteinsTranscription Factorsvif Gene Products, Human Immunodeficiency VirusElonginBCHIV-1 viral infectivity factorNMRSOCS-box domainsolution structure

Identifiers

PMID24225024
PMCPMC3843819
OpenAlexW2159629787

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.