Evidence map›Paper›PMID 24224142›Full record

ArticleSystems biomedicine (Austin, Tex.)2013

Toward plasmonics-enabled spatiotemporal activity patterns in three-dimensional culture models.

Somin Eunice Lee, A Paul Alivisatos, Mina J Bissell

Open access · bronzeAbstract read
In one paragraph

Article in Systems biomedicine (Austin, Tex.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 2 countries.

Somin Eunice Lee
A Paul Alivisatos
Mina J Bissell
Lawrence Berkeley National Laboratory · USMSSCORPS (Taiwan) · TWUniversity of California, Berkeley · US

Funding

Systems-Based Predictions of Responses to Cancer TherapyU54CA112970 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI MILLS, GORDON B. · 2004 to 2014
$27.1M
TRANS-NETWORK PROJECTSU54CA143836 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI LIPHARDT, JAN T. · 2009 to 2014
$15.1M
Role of Metalloproteinases in Mammary Gland RemodelingR01CA057621 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WERB, ZENA · 1993 to 2017
$9.0M
Myoepithelial cell differentiation defects in ductal carcinoma in situ (DCIS)U01CA143233 · NCI · DANA-FARBER CANCER INST · PI BISSELL, MINA, POLLARD, JEFFREY W. · 2009 to 2013
$2.5M
High Content Representation and Association of 3D Cell Culture ModelsR01CA140663 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PARVIN, BAHRAM A. · 2011 to 2014
$2.4M
Definition of Microenvironment in Breast CancerR37CA064786 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI BISSELL, MINA · 2009 to 2013
$2.0M
Nanoplasmonics-enabled Quantitative Spatiotemporal Activity Mapping in EngineeredF32EB013972 · NIBIB · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI LEE, SOMIN · 2011 to 2012
$103k
NCI NIH HHS R01 CA057621NCI NIH HHS R01 CA140663NCI NIH HHS R37 CA064786NCI NIH HHS U01 CA143233NCI NIH HHS U54 CA112970NCI NIH HHS U54 CA143836NIBIB NIH HHS F32 EB013972
6 · The paper itself

Abstract

Spatiotemporal activity patterns of proteases such as matrix metalloproteinases and cysteine proteases in organs have the potential to provide insight into how organized structural patterns arise during tissue morphogenesis and may suggest therapeutic strategies to repair diseased tissues. Toward imaging spatiotemporal activity patterns, recently increased emphasis has been placed on imaging activity patterns in three-dimensional culture models that resemble tissues in vivo. Here, we briefly review key methods, based on fluorogenic modifications either to the extracellular matrix or to the protease-of-interest, that have allowed for qualitative imaging of activity patterns in three-dimensional culture models. We highlight emerging plasmonic methods that address significant improvements in spatial and temporal resolution and have the potential to enable quantitative measurement of spatiotemporal activity patterns with single-molecule sensitivity.

Indexed as

branching morphogenesisgold nanocrystalgold nanoparticlemetastasismigrationplasmon couplingplasmon rulerprotease activitytissue morphogenesis

Identifiers

PMID24224142
PMCPMC3819427
OpenAlexW2206081786

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.