Evidence map›Paper›PMID 24223997›Full record

ArticlePloS one2013

Global transcriptome analysis of Lactococcus garvieae strains in response to temperature.

Mónica Aguado-Urda, Alicia Gibello, M del Mar Blanco, José F Fernández-Garayzábal, Victoria López-Alonso, Guillermo H López-Campos

Abstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Transcriptome and Proteome of Fish-PathogenicFrontiers in microbiology · 2018
    Article
  5. Temperature-Dependent Gene Expression inFrontiers in microbiology · 2018
    Article
  6. Article
  7. The Hybrid Strategy ofFrontiers in microbiology · 2017
    Article
  8. Early Transcriptome Response ofFrontiers in microbiology · 2017
    Article
  9. Article
  10. Review
  11. Lactococcus garvieae: a small bacteria and a big data world.Health information science and systems · 2015
    Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mónica Aguado-UrdaDepartment of Animal Health, Faculty of Veterinary Sciences, Complutense University, Madrid, Spain.
Alicia Gibello
M del Mar Blanco
José F Fernández-Garayzábal
Victoria López-Alonso
Guillermo H López-Campos

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lactococcus garvieae is an important fish and an opportunistic human pathogen. The genomic sequences of several L. garvieae strains have been recently published, opening the possibility of global studies on the biology of this pathogen. In this study, a whole genome DNA microarray of two strains of L. garvieae was designed and validated. This DNA microarray was used to investigate the effects of growth temperature (18°C and 37°C) on the transcriptome of two clinical strains of L. garvieae that were isolated from fish (Lg8831) and from a human case of septicemia (Lg21881). The transcriptome profiles evidenced a strain-specific response to temperature, which was more evident at 18°C. Among the most significant findings, Lg8831 was found to up-regulate at 18°C several genes encoding different cold-shock and cold-induced proteins involved in an efficient adaptive response of this strain to low-temperature conditions. Another relevant result was the description, for the first time, of respiratory metabolism in L. garvieae, whose gene expression regulation was temperature-dependent in Lg21881. This study provides new insights about how environmental factors such as temperature can affect L. garvieae gene expression. These data could improve our understanding of the regulatory networks and adaptive biology of this important pathogen.

Indexed as

Gene Expression ProfilingTemperatureLactococcusOligonucleotide Array Sequence AnalysisTranscription, Genetic

Identifiers

PMID24223997
PMCPMC3817100

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.