Evidence map›Paper›PMID 24220694›Full record

ArticleBritish journal of cancer2013

Epigenetic status of LINE-1 predicts clinical outcome in early-stage rectal cancer.

A Benard, C J H van de Velde, L Lessard, H Putter, L Takeshima, P J K Kuppen, D S B Hoon

Open access · hybridAbstract readMulticenter Study
In one paragraph

Article in British journal of cancer, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 3 pooled it
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 3 syntheses or guidelines pooled it, 52 citations in OpenAlex.

  1. Pooled it
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  11. SIRT6 Through the Brain Evolution, Development, and Aging.Frontiers in aging neuroscience · 2021
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  17. Targeting histone methylation for colorectal cancer.Therapeutic advances in gastroenterology · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

A Benard1] Department of Molecular Oncology, John Wayne Cancer Institute, Santa Monica, CA 90404, USA [2] Department of Surgery, Leiden University Medical Center, Leiden 2300RC, The Netherlands.
C J H van de Velde
L Lessard
H Putter
L Takeshima
P J K Kuppen
D S B Hoon
Leiden University Medical Center · NLMolecular Oncology (United States) · USSaint John's Health Center · US

Funding

Predictive Epigenomic Biomarkers In Rectal Cancer Patients Receiving TreatmentR01CA171767 · NCI · SAINT JOHN'S CANCER INSTITUTE · PI HOON, DAVE S B · 2013 to 2017
$1.9M
NCI NIH HHS 1R01CA171767-01A1NCI NIH HHS R01 CA171767
6 · The paper itself

Abstract

backgroundWe evaluated the clinical prognostic value of methylation of two non-coding repeat sequences, long interspersed element 1 (LINE-1) and Alu, in rectal tumour tissues. In addition to DNA methylation, expression of histone modifications H3K27me3 and H3K9Ac was studied in this patient cohort.

methodsLINE-1 and Alu methylation were assessed in DNA extracted from formalin-fixed paraffin-embedded tissues. A pilot (30 tumour and 25 normal tissues) and validation study (189 tumour and 53 normal tissues) were performed. Histone modifications H3K27me3 and H3K9Ac were immunohistochemically stained on tissue microarrays of the study cohort.

resultsIn early-stage rectal cancer (stage I-II), hypomethylation of LINE-1 was an independent clinical prognostic factor, showing shorter patient survival (P=0.014; HR: 4.6) and a higher chance of tumour recurrence (P=0.001; HR: 9.6). Alu methylation did not show any significant correlation with clinical parameters, suggesting an active role of LINE-1 in tumour development. Expression of H3K27me3 (silencing gene expression) and H3K9Ac (activating gene expression) in relation to methylation status of LINE-1 and Alu supported this specific role of LINE-1 methylation.

conclusionThe epigenetic status of LINE-1, but not of Alu, is prognostic in rectal cancer, indicating an active role for LINE-1 in determining clinical outcome.

Indexed as

DNA MethylationClinical Trials as TopicDeoxyribonuclease IDNA, NeoplasmEpigenomicsFemaleFormaldehydeHistonesHumansKaplan-Meier EstimateMaleMiddle AgedParaffin EmbeddingPrognosisRectal NeoplasmsRepetitive Sequences, Nucleic AcidDeoxyribonuclease IDNA, NeoplasmFormaldehydeHistonesLINE-1 endonuclease, human

Identifiers

PMID24220694
PMCPMC3859941
OpenAlexW1964834422

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.