Evidence map›Paper›PMID 24220575›Full record

ArticleNature communications2013

Identification of a pan-cancer oncogenic microRNA superfamily anchored by a central core seed motif.

Mark P Hamilton, Kimal Rajapakshe, Sean M Hartig, Boris Reva, Michael D McLellan, Cyriac Kandoth, Li Ding, Travis I Zack, Preethi H Gunaratne, David A Wheeler and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Nature communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 128 citations in OpenAlex.

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  6. MiRZhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2023
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  18. American journal of physiology. Endocrinology and metabolism · 2020
    Article
  19. Trimester-specific plasma exosome microRNA expression profiles in preeclampsia.The journal of maternal-fetal & neonatal medicine : the official journal of the European Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal Societies, the International Society of Perinatal Obstetricians · 2020
    Article
  20. Article

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Mark P HamiltonDepartment of Molecular and Cellular Biology, Baylor College of Medicine, 1 Baylor Plaza Houston M822, Houston, Texas 77030, USA.
Kimal Rajapakshe
Sean M Hartig
Boris Reva
Michael D McLellan
Cyriac Kandoth
Li Ding
Travis I Zack
Preethi H Gunaratne
David A Wheeler
Cristian Coarfa
Sean E McGuire
Baylor College of Medicine · USWashington University in St. Louis · USHarvard University · USMemorial Sloan Kettering Cancer Center · USUniversity of Houston · US

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI DAVID R ROWLEY · 2007 to 2026
$73.9M
Diabetes Endocrinology Research CenterP30DK079638 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI CHAN, LAWRENCE · 2008 to 2012
$6.4M
A novel axis regulates adipocyte plasticityK01DK096093 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI HARTIG, SEAN · 2013 to 2015
$444k
NCI NIH HHS P30 CA125123NCI NIH HHS P30CA125123NHGRI NIH HHS U54 HG003079NIDDK NIH HHS 1K01DK096093NIDDK NIH HHS K01 DK096093NIDDK NIH HHS P30 DK079638NIDDK NIH HHS P30-DK079638
6 · The paper itself

Abstract

MicroRNAs modulate tumorigenesis through suppression of specific genes. As many tumour types rely on overlapping oncogenic pathways, a core set of microRNAs may exist, which consistently drives or suppresses tumorigenesis in many cancer types. Here we integrate The Cancer Genome Atlas (TCGA) pan-cancer data set with a microRNA target atlas composed of publicly available Argonaute Crosslinking Immunoprecipitation (AGO-CLIP) data to identify pan-tumour microRNA drivers of cancer. Through this analysis, we show a pan-cancer, coregulated oncogenic microRNA 'superfamily' consisting of the miR-17, miR-19, miR-130, miR-93, miR-18, miR-455 and miR-210 seed families, which cotargets critical tumour suppressors via a central GUGC core motif. We subsequently define mutations in microRNA target sites using the AGO-CLIP microRNA target atlas and TCGA exome-sequencing data. These combined analyses identify pan-cancer oncogenic cotargeting of the phosphoinositide 3-kinase, TGFβ and p53 pathways by the miR-17-19-130 superfamily members.

Indexed as

Gene Expression Regulation, Neoplastic3' Untranslated RegionsAlgorithmsAmino Acid MotifsCarcinogenesisGene Expression ProfilingHEK293 CellsHumansMicroRNAsMultigene FamilyMutationNeoplasmsPhosphatidylinositol 3-KinasesPolymorphism, Single NucleotideRNA, MessengerTransforming Growth Factor beta3' Untranslated RegionsMicroRNAsPhosphatidylinositol 3-KinasesRNA, MessengerTP53 protein, humanTransforming Growth Factor betaTumor Suppressor Protein p53

Identifiers

PMID24220575
PMCPMC3868236
OpenAlexW2164012646

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.