Evidence map›Paper›PMID 24219313›Full record

ArticleJournal of the American Chemical Society2013

β-Lactamase inhibition by 7-alkylidenecephalosporin sulfones: allylic transposition and formation of an unprecedented stabilized acyl-enzyme.

Elizabeth A Rodkey, David C McLeod, Christopher R Bethel, Kerri M Smith, Yan Xu, Weirui Chai, Tao Che, Paul R Carey, Robert A Bonomo, Focco van den Akker and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Elizabeth A RodkeyDepartment of Biochemistry, Case Western Reserve University , 10900 Euclid Ave., Cleveland, Ohio 44106, United States.
David C McLeod
Christopher R Bethel
Kerri M Smith
Yan Xu
Weirui Chai
Tao Che
Paul R Carey
Robert A Bonomo
Focco van den Akker
John D Buynak
Case Western Reserve University · USSouthern Methodist University · USCleveland State University · USLouis Stokes Cleveland VA Medical Center · US

Funding

Understanding B-Lactam Resistance in Acinetobacter baumanniiR01AI072219 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI ROBERT A. BONOMO, Philip N. Rather · 2007 to 2026
$6.6M
Understanding ceftazidime resistance in SHV B-LactamasesR01AI063517 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BONOMO, ROBERT A. · 2005 to 2023
$4.9M
A Mechanism-Based Approach to Metallo-beta-Lactamase InhibitionR01AI100560 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BONOMO, ROBERT A., SPENCER, JAMES · 2012 to 2022
$4.4M
RAMAN STUDIES OF ENZYME COMPLEXES IN SOLUTION &CRYSTALSR01GM054072 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI CAREY, PAUL R · 1996 to 2013
$3.5M
Mechanistic studies and inhibition strategies for antibiotic resistanceR01AI062968 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI VAN DEN AKKER, FOCCO · 2007 to 2010
$1.1M
Raman Spectroscopic Analysis of Beta-Lactamase Drug InteractionsR56GM054072 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI CAREY, PAUL R · 2009 to 2009
$359k
Molecular mechanisms of antibiotic resistanceR56AI062968 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI VAN DEN AKKER, FOCCO · 2005 to 2005
$270k
NIAID NIH HHS AI062968NIAID NIH HHS R01 AI062968NIAID NIH HHS R01 AI063517NIAID NIH HHS R01AI063517NIAID NIH HHS R01 AI072219NIAID NIH HHS R01AI072219NIAID NIH HHS R01 AI100560NIAID NIH HHS R01AI100560NIAID NIH HHS R56 AI062968NIGMS NIH HHS GM54072NIGMS NIH HHS R01 GM054072NIGMS NIH HHS R56 GM054072
6 · The paper itself

Abstract

The inhibition of the class A SHV-1 β-lactamase by 7-(tert-butoxycarbonyl)methylidenecephalosporin sulfone was examined kinetically, spectroscopically, and crystallographically. An 1.14 Å X-ray crystal structure shows that the stable acyl-enzyme, which incorporates an eight-membered ring, is a covalent derivative of Ser70 linked to the 7-carboxy group of 2-H-5,8-dihydro-1,1-dioxo-1,5-thiazocine-4,7-dicarboxylic acid. A cephalosporin-derived enzyme complex of this type is unprecedented, and the rearrangement leading to its formation may offer new possibilities for inhibitor design. The observed acyl-enzyme derives its stability from the resonance stabilization conveyed by the β-aminoacrylate (i.e., vinylogous urethane) functionality as there is relatively little interaction of the eight-membered ring with active site residues. Two mechanistic schemes are proposed, differing in whether, subsequent to acylation of the active site serine and opening of the β-lactam, the resultant dihydrothiazine fragments on its own or is assisted by an adjacent nucleophilic atom, in the form of the carbonyl oxygen of the C7 tert-butyloxycarbonyl group. This compound was also found to be a submicromolar inhibitor of the class C ADC-7 and PDC-3 β-lactamases.

Indexed as

beta-Lactamase InhibitorsBase SequenceCephalosporinsCrystallography, X-RayDNA PrimersModels, MolecularSpectrometry, Mass, Electrospray IonizationSulfonesbeta-Lactamase InhibitorsCephalosporinsDNA PrimersSulfones

Identifiers

PMID24219313
PMCPMC4042847
OpenAlexW2062976980

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.