Evidence map›Paper›PMID 24218640›Full record

ReviewPhilosophical transactions of the Royal Society of London. Series B, Biological sciences2013

The structure and evolution of cis-regulatory regions: the shavenbaby story.

David L Stern, Nicolás Frankel

Abstract readReview
In one paragraph

Review in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Article
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  6. A developmental atlas of male terminalia across twelve species ofFrontiers in cell and developmental biology · 2024
    Article
  7. Article
  8. Mutational scans reveal differential evolvability ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
  9. Theme and variation in the evolution of insect sex determination.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2023
    Review
  10. Characterisation of the role and regulation ofFrontiers in cell and developmental biology · 2023
    Article
  11. Article
  12. Genetic basis of speciation and adaptation: from loci to causative mutations.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  13. Review
  14. Review
  15. Article
  16. Article
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  19. Article
  20. A homeotic shift late in development drives mimetic color variation in a bumble bee.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

David L SternJanelia Farm Research Campus, Howard Hughes Medical Institute, , 19700 Helix Drive, Ashburn, VA 20147-2408, USA.
Nicolás Frankel

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this paper, we provide a historical account of the contribution of a single line of research to our current understanding of the structure of cis-regulatory regions and the genetic basis for morphological evolution. We revisit the experiments that shed light on the evolution of larval cuticular patterns within the genus Drosophila and the evolution and structure of the shavenbaby gene. We describe the experiments that led to the discovery that multiple genetic changes in the cis-regulatory region of shavenbaby caused the loss of dorsal cuticular hairs (quaternary trichomes) in first instar larvae of Drosophila sechellia. We also discuss the experiments that showed that the convergent loss of quaternary trichomes in D. sechellia and Drosophila ezoana was generated by parallel genetic changes in orthologous enhancers of shavenbaby. We discuss the observation that multiple shavenbaby enhancers drive overlapping patterns of expression in the embryo and that these apparently redundant enhancers ensure robust shavenbaby expression and trichome morphogenesis under stressful conditions. All together, these data, collected over 13 years, provide a fundamental case study in the fields of gene regulation and morphological evolution, and highlight the importance of prolonged, detailed studies of single genes.

Indexed as

Evolution, MolecularAnimalsDNA-Binding ProteinsDrosophilaDrosophila ProteinsGene Expression Regulation, DevelopmentalMorphogenesisRegulatory Sequences, Nucleic AcidSpecies SpecificityTranscription FactorsTrichomesDNA-Binding ProteinsDrosophila Proteinsovo protein, DrosophilaTranscription Factorscis-regulatory evolutioncis-regulatory structureevolution of enhancer functionmorphological changeshavenbaby gene

Identifiers

PMID24218640
PMCPMC3826501

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.