Evidence map›Paper›PMID 24218595›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Hox5 interacts with Plzf to restrict Shh expression in the developing forelimb.

Ben Xu, Steven M Hrycaj, Daniel C McIntyre, Nicholas C Baker, Jun K Takeuchi, Lucie Jeannotte, Zachary B Gaber, Bennett G Novitch, Deneen M Wellik

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it, 58 citations in OpenAlex.

  1. The molecular genetics of human appendicular skeleton.Molecular genetics and genomics : MGG · 2022
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Characterization of a novel Hoxa5eGFP mouse line.Developmental dynamics : an official publication of the American Association of Anatomists · 2023
    Article
  11. Article
  12. How might we build limbsFrontiers in cell and developmental biology · 2023
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  19. Article
  20. Transcriptional changes in chick wing bud polarization induced by retinoic acid.Developmental dynamics : an official publication of the American Association of Anatomists · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Ben XuDepartment of Internal Medicine, Division of Molecular Medicine and Genetics, University of Michigan, Ann Arbor, MI 48109.
Steven M Hrycaj
Daniel C McIntyre
Nicholas C Baker
Jun K Takeuchi
Lucie Jeannotte
Zachary B Gaber
Bennett G Novitch
Deneen M Wellik
University of Michigan–Ann Arbor · USBroad Center · USCentre hospitalier universitaire de Québec · CAThe University of Tokyo · JPUniversity of California, Los Angeles · US

Funding

MICHIGAN INSTITUTE FOR CLINICAL AND HEALTH RESEARCH (MICHR) (UL1): (BPCA)UL1RR024986 · NCRR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHANLEY, THOMAS P. · 2007 to 2011
$51.2M
PULMONARY CELLULAR AND MOLECULAR BIOLOGY TRAININGT32HL007749 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Robert Pickett Dickson · 1993 to 2026
$19.9M
Role of Hox Genes in Integration of the Musculoskeletal System in Development R01AR061402 · NIAMS · UNIVERSITY OF WISCONSIN-MADISON · PI WELLIK, DENEEN M · 2011 to 2021
$3.3M
Transcriptional regulation of neuronal differentiationR01NS072804 · NINDS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI NOVITCH, BENNETT G · 2010 to 2014
$1.6M
Function of Olig2-Regulated Genes in Spinal Motor Neuron DevelopmentR01NS053976 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NOVITCH, BENNETT G · 2006 to 2010
$1.6M
Hox Genes in Limb PatterningR01AR057018 · NIAMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WELLIK, DENEEN M · 2009 to 2010
$745k
NCRR NIH HHS UL1 RR024986NCRR NIH HHS UL1RR024986NHLBI NIH HHS T32 HL007749NIAMS NIH HHS AR057018NIAMS NIH HHS AR061402NIAMS NIH HHS R01 AR057018NIAMS NIH HHS R01 AR061402NINDS NIH HHS R01 NS053976NINDS NIH HHS R01 NS072804
6 · The paper itself

Abstract

To date, only the five most posterior groups of Hox genes, Hox9-Hox13, have demonstrated loss-of-function roles in limb patterning. Individual paralog groups control proximodistal patterning of the limb skeletal elements. Hox9 genes also initiate the onset of Hand2 expression in the posterior forelimb compartment, and collectively, the posterior HoxA/D genes maintain posterior Sonic Hedgehog (Shh) expression. Here we show that an anterior Hox paralog group, Hox5, is required for forelimb anterior patterning. Deletion of all three Hox5 genes (Hoxa5, Hoxb5, and Hoxc5) leads to anterior forelimb defects resulting from derepression of Shh expression. The phenotype requires the loss of all three Hox5 genes, demonstrating the high level of redundancy in this Hox paralogous group. Further analyses reveal that Hox5 interacts with promyelocytic leukemia zinc finger biochemically and genetically to restrict Shh expression. These findings, along with previous reports showing that point mutations in the Shh limb enhancer lead to similar anterior limb defects, highlight the importance of Shh repression for proper patterning of the vertebrate limb.

Indexed as

AnimalsForelimbGene Expression Regulation, DevelopmentalHedgehog ProteinsHEK293 CellsHumansIn Situ HybridizationKruppel-Like Transcription FactorsMiceOrganogenesisPromyelocytic Leukemia Zinc Finger ProteinReal-Time Polymerase Chain ReactionTranscription FactorsHedgehog ProteinsHoxd4 protein, mouseKruppel-Like Transcription FactorsPromyelocytic Leukemia Zinc Finger ProteinShh protein, mouseTranscription FactorsZbtb16 protein, mouseanteroposterior limb patterninggene interactionslimb developmentmouse developmental geneticsorganogenesis

Identifiers

PMID24218595
PMCPMC3845161
OpenAlexW2134649039

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.