Evidence map›Paper›PMID 24218560›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Phage T7 Gp2 inhibition of Escherichia coli RNA polymerase involves misappropriation of σ70 domain 1.1.

Brian Bae, Elizabeth Davis, Daniel Brown, Elizabeth A Campbell, Sivaramesh Wigneshweraraj, Seth A Darst

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.

0numbers the graph read from it
0cells of the map it votes in
109citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

109 citing papers in PubMed, 168 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Real-time capture of σNature communications · 2025
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
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  15. AInternational journal of molecular sciences · 2023
    Article
  16. Article
  17. An ensemble of interconverting conformations of the elemental paused transcription complex creates regulatory options.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. Review
  19. Article
  20. Article

49 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Brian BaeLaboratory of Molecular Biophysics, The Rockefeller University, New York, NY 10065.
Elizabeth Davis
Daniel Brown
Elizabeth A Campbell
Sivaramesh Wigneshweraraj
Seth A Darst
Rockefeller University · USImperial College London · GBMedical Research Council · GB

Funding

Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI EISENBERG, DAVID · 2001 to 2011
$28.2M
E COLI RNA POLYMERASE SUBUNIT--STRUCTURE/FUNCTIONR01GM053759 · NIGMS · ROCKEFELLER UNIVERSITY · PI DARST, SETH A. · 1996 to 2015
$6.9M
Structural Studies of Bacterial Transcription InitiationF32GM103170 · NIGMS · ROCKEFELLER UNIVERSITY · PI BAE, BRIAN · 2012 to 2013
$106k
Biotechnology and Biological Sciences Research Council BB/K000233/1Medical Research Council MR/J006874/1NCRR NIH HHS P41 RR015301NCRR NIH HHS RR-15301NIGMS NIH HHS F32 GM103170NIGMS NIH HHS NIH F32 GM103170NIGMS NIH HHS R01 GM053759Wellcome Trust 100958
6 · The paper itself

Abstract

Bacteriophage T7 encodes an essential inhibitor of the Escherichia coli host RNA polymerase (RNAP), the product of gene 2 (Gp2). We determined a series of X-ray crystal structures of E. coli RNAP holoenzyme with or without Gp2. The results define the structure and location of the RNAP σ(70) subunit domain 1.1(σ(1.1)(70)) inside the RNAP active site channel, where it must be displaced by the DNA upon formation of the open promoter complex. The structures and associated data, combined with previous results, allow for a complete delineation of the mechanism for Gp2 inhibition of E. coli RNAP. In the primary inhibition mechanism, Gp2 forms a protein-protein interaction with σ(1.1)(70), preventing the normal egress of σ(1.1)(70) from the RNAP active site channel. Gp2 thus misappropriates a domain of the RNAP holoenzyme, σ(1.1)(70), to inhibit the function of the enzyme.

Indexed as

Models, MolecularProtein ConformationCrystallography, X-RayDNA-Directed RNA PolymerasesEscherichia coliProtein Structure, TertiaryRepressor ProteinsSigma FactorDNA-Directed RNA Polymerasesgene 2 product, bacteriophage T7Repressor ProteinsRNA polymerase sigma 70Sigma Factorbacteriophage T7 Gp2transcriptionX-ray crystallography

Identifiers

PMID24218560
PMCPMC3856789
OpenAlexW2038061439

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.