Evidence map›Paper›PMID 24218558›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Metabolically programmed quality control system for dolichol-linked oligosaccharides.

Yoichiro Harada, Kazuki Nakajima, Yuki Masahara-Negishi, Hudson H Freeze, Takashi Angata, Naoyuki Taniguchi, Tadashi Suzuki

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
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  11. β-Oxidation and autophagy are critical energy providers during acute glucose depletion in SProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  12. Article
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  17. Article
  18. Generation and degradation of free asparagine-linked glycans.Cellular and molecular life sciences : CMLS · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yoichiro HaradaGlycometabolome Team, Systems Glycobiology Research Group and Disease Glycomics Team, Systems Glycobiology Research Group, RIKEN-Max Planck Joint Research Center, Global Research Cluster, RIKEN, 2-1 Hirosawa, Wako, Saitama 351-0198, Japan.
Kazuki Nakajima
Yuki Masahara-Negishi
Hudson H Freeze
Takashi Angata
Naoyuki Taniguchi
Tadashi Suzuki

Funding

Carbohydrate Deficient Glycoprotein Syndromes: Models and TherapyR01DK055615 · NIDDK · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI FREEZE, HUDSON H. · 1999 to 2013
$4.4M
NIDDK NIH HHS R01 DK055615NIDDK NIH HHS R01DK55615
6 · The paper itself

Abstract

The glycolipid Glc3Man9GlcNAc2-pyrophosphate-dolichol serves as the precursor for asparagine (N)-linked protein glycosylation in mammals. The biosynthesis of dolichol-linked oligosaccharides (DLOs) is arrested in low-glucose environments via unknown mechanisms, resulting in abnormal N-glycosylation. Here, we show that under glucose deprivation, DLOs are prematurely degraded during the early stages of DLO biosynthesis by pyrophosphatase, leading to the release of singly phosphorylated oligosaccharides into the cytosol. We identified that the level of GDP-mannose (Man), which serves as a donor substrate for DLO biosynthesis, is substantially reduced under glucose deprivation. We provide evidence that the selective shutdown of the GDP-Man biosynthetic pathway is sufficient to induce the release of phosphorylated oligosaccharides. These results indicate that glucose-regulated metabolic changes in the GDP-Man biosynthetic pathway cause the biosynthetic arrest of DLOs and facilitate their premature degradation by pyrophosphatase. We propose that this degradation system may avoid abnormal N-glycosylation with premature oligosaccharides under conditions that impair efficient DLO biosynthesis.

Indexed as

AnimalsAsparagineBiosynthetic PathwaysChromatography, High Pressure LiquidCytosolDolicholsEndoplasmic ReticulumFibroblastsGlucoseGlycosylationGuanosine Diphosphate MannoseMiceModels, BiologicalOligosaccharidesPeptidesPolysaccharidesAsparagineDolicholsGlucoseGuanosine Diphosphate MannoseOligosaccharidesPeptidesPolysaccharidesPyrophosphatases

Identifiers

PMID24218558
PMCPMC3845098

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.