Evidence map›Paper›PMID 24218398›Full record

ArticleThe Journal of general physiology2013

Peregrination of the selectivity filter delineates the pore of the human voltage-gated proton channel hHV1.

Deri Morgan, Boris Musset, Kethika Kulleperuma, Susan M E Smith, Sindhu Rajan, Vladimir V Cherny, Régis Pomès, Thomas E DeCoursey

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of general physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 42 citations in OpenAlex.

  1. Transcendent Aspects of Proton Channels.Annual review of physiology · 2024
    Review
  2. Review
  3. Review
  4. Review
  5. Article
  6. Zn2+ to probe voltage-gated proton (Hv1) channels.The Journal of general physiology · 2020
    Article
  7. Article
  8. Voltage-dependent structural models of the human Hv1 proton channel from long-timescale molecular dynamics simulations.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Hydrophobic gasket mutation produces gating pore currents in closed human voltage-gated proton channels.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  10. Outlining the proton-conduction pathway in otopetrin channels.Nature structural & molecular biology · 2019
    Article
  11. HistidineThe Journal of general physiology · 2018
    Article
  12. Voltage and pH sensing by the voltage-gated proton channel, HJournal of the Royal Society, Interface · 2018
    Review
  13. Article
  14. Article
  15. Rebuttal from Thomas E. DeCoursey.The Journal of physiology · 2017
    Article
  16. Does Proton Conduction in the Voltage-Gated HThe journal of physical chemistry. B · 2017
    Article
  17. On the role of water density fluctuations in the inhibition of a proton channel.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Deri MorganDepartment of Molecular Biophysics and Physiology, Rush University, Chicago, IL 60612.
Boris Musset
Kethika Kulleperuma
Susan M E Smith
Sindhu Rajan
Vladimir V Cherny
Régis Pomès
Thomas E DeCoursey
Rush University · USHospital for Sick Children · CAKennesaw State University · USUniversity of Chicago · USUniversity of Toronto · CA

Funding

Selectivity and Permeation in the Human Voltage-gated Proton Channel, hHv1R01GM102336 · NIGMS · RUSH UNIVERSITY MEDICAL CENTER · PI DECOURSEY, THOMAS E, SMITH, SUSAN M.E. · 2013 to 2016
$1.3M
Structure-Function Releationships of Voltage-Gated Proton ChannelsR01GM087507 · NIGMS · RUSH UNIVERSITY MEDICAL CENTER · PI DECOURSEY, THOMAS E · 2010 to 2013
$1.2M
CIHR MOP130461CIHR MOP43949NIGMS NIH HHS R01 GM087507NIGMS NIH HHS R01-GM087507NIGMS NIH HHS R01 GM102336
6 · The paper itself

Abstract

Extraordinary selectivity is crucial to all proton-conducting molecules, including the human voltage-gated proton channel (hHV1), because the proton concentration is >10(6) times lower than that of other cations. Here we use "selectivity filter scanning" to elucidate the molecular requirements for proton-specific conduction in hHV1. Asp(112), in the middle of the S1 transmembrane helix, is an essential part of the selectivity filter in wild-type (WT) channels. After neutralizing Asp(112) by mutating it to Ala (D112A), we introduced Asp at each position along S1 from 108 to 118, searching for "second site suppressor" activity. Surprisingly, most mutants lacked even the anion conduction exhibited by D112A. Proton-specific conduction was restored only with Asp or Glu at position 116. The D112V/V116D channel strikingly resembled WT in selectivity, kinetics, and ΔpH-dependent gating. The S4 segment of this mutant has similar accessibility to WT in open channels, because R211H/D112V/V116D was inhibited by internally applied Zn(2+). Asp at position 109 allowed anion permeation in combination with D112A but did not rescue function in the nonconducting D112V mutant, indicating that selectivity is established externally to the constriction at F150. The three positions that permitted conduction all line the pore in our homology model, clearly delineating the conduction pathway. Evidently, a carboxyl group must face the pore directly to enable conduction. Molecular dynamics simulations indicate reorganization of hydrogen bond networks in the external vestibule in D112V/V116D. At both positions where it produces proton selectivity, Asp frequently engages in salt linkage with one or more Arg residues from S4. Surprisingly, mean hydration profiles were similar in proton-selective, anion-permeable, and nonconducting constructs. That the selectivity filter functions in a new location helps to define local environmental features required to produce proton-selective conduction.

Indexed as

Ion Channel GatingMolecular Dynamics SimulationProtonsAmino Acid SequenceAnimalsChlorocebus aethiopsCOS CellsHEK293 CellsHumansIon ChannelsMolecular Sequence DataMutationProtein Structure, TertiaryZincIon ChannelsProtonsZinc

Identifiers

PMID24218398
PMCPMC3840923
OpenAlexW2164604582

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.