Evidence map›Paper›PMID 24218397›Full record

ArticleThe Journal of general physiology2013

Molecular interactions involved in proton-dependent gating in KcsA potassium channels.

David J Posson, Ameer N Thompson, Jason G McCoy, Crina M Nimigean

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of general physiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Probing allosteric coupling in a constitutively open mutant of the ion channel KcsA using solid-state NMR.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  5. Why Nature Chose Potassium.Journal of molecular evolution · 2019
    Review
  6. Identifying coupled clusters of allostery participants through chemical shift perturbations.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Conformational dynamics and role of the acidic pocket in ASIC pH-dependent gating.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Inactivation in the potassium channel KcsA.Journal of structural biology: X
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 2 countries.

David J PossonDepartment of Anesthesiology, 2 Department of Physiology and Biophysics, and 3 Department of Biochemistry, Weill Cornell Medical College, New York, NY 10065.
Ameer N Thompson
Jason G McCoy
Crina M Nimigean
Cornell University · US

Funding

Molecular Mechanisms of Potassium Channel Permeation and GatingR01GM088352 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI NIMIGEAN, CRINA M · 2010 to 2025
$5.6M
Gating Mechanisms of the Prokaryotic Calcium Activated Potassium channel MthKF32GM087865 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI POSSON, DAVID JOHN · 2009 to 2010
$109k
NIGMS NIH HHS F32 GM087865NIGMS NIH HHS F32GM087865NIGMS NIH HHS GM088352NIGMS NIH HHS R01 GM088352
6 · The paper itself

Abstract

The bacterial potassium channel KcsA is gated open by the binding of protons to amino acids on the intracellular side of the channel. We have identified, via channel mutagenesis and x-ray crystallography, two pH-sensing amino acids and a set of nearby residues involved in molecular interactions that influence gating. We found that the minimal mutation of one histidine (H25) and one glutamate (E118) near the cytoplasmic gate completely abolished pH-dependent gating. Mutation of nearby residues either alone or in pairs altered the channel's response to pH. In addition, mutations of certain pairs of residues dramatically increased the energy barriers between the closed and open states. We proposed a Monod-Wyman-Changeux model for proton binding and pH-dependent gating in KcsA, where H25 is a "strong" sensor displaying a large shift in pKa between closed and open states, and E118 is a "weak" pH sensor. Modifying model parameters that are involved in either the intrinsic gating equilibrium or the pKa values of the pH-sensing residues was sufficient to capture the effects of all mutations.

Indexed as

Ion Channel GatingMolecular Dynamics SimulationProtonsAmino Acid SequenceBacterial ProteinsMolecular Sequence DataMutationPotassium Channels, Voltage-GatedBacterial ProteinsKcsA protein, Streptomyces coelicolorPotassium Channels, Voltage-GatedProtons

Identifiers

PMID24218397
PMCPMC3840921
OpenAlexW2128192179

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.