ArticleNucleic acids research2014
NPInter v2.0: an updated database of ncRNA interactions.
Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.
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Who cites it
80 citing papers in PubMed.
- A Deep Learning Framework for Accurate lncRNA-Protein Interaction Prediction via Multi-Kernel Graph Embeddings and Self-Attention.Interdisciplinary sciences, computational life sciences · 2026Article
- DSGCNLDA: A Multi-view Learning Model with DualScope Attention for lncRNA-Disease Association Prediction.Interdisciplinary sciences, computational life sciences · 2026Article
- LncPTPred: predicting lncRNA-protein interaction based on crosslinking and immunoprecipitation (CLIP-Seq) data.Briefings in bioinformatics · 2025Article
- RNA-protein interaction prediction using network-guided deep learning.Communications biology · 2025Article
- Article
- LPItabformer: Enhancing generalization in predicting lncRNA-protein interactions via a tabular Transformer.Computational and structural biotechnology journal · 2025Article
- CBIL-VHPLI: a model for predicting viral-host protein-lncRNA interactions based on machine learning and transfer learning.Scientific reports · 2024Article
- Fusion of multi-source relationships and topology to infer lncRNA-protein interactions.Molecular therapy. Nucleic acids · 2024Article
- Big data and deep learning for RNA biology.Experimental & molecular medicine · 2024Review
- Predicting lncRNA-protein interactions through deep learning framework employing multiple features and random forest algorithm.BMC bioinformatics · 2024Article
- Prediction of LncRNA-protein Interactions Using Auto-Encoder, SE-ResNet Models and Transfer Learning.MicroRNA (Shariqah, United Arab Emirates) · 2024Article
- A task-specific encoding algorithm for RNAs and RNA-associated interactions based on convolutional autoencoder.Nucleic acids research · 2023Article
- A Hitchhiker's guide to RNA-RNA structure and interaction prediction tools.Briefings in bioinformatics · 2023Review
- LncRNA-protein interaction prediction with reweighted feature selection.BMC bioinformatics · 2023Article
- Article
- NPInter v5.0: ncRNA interaction database in a new era.Nucleic acids research · 2023Article
- ncRPI-LGAT: Prediction of ncRNA-protein interactions with line graph attention network framework.Computational and structural biotechnology journal · 2023Article
- Predicting lncRNA-protein interactions with bipartite graph embedding and deep graph neural networks.Frontiers in genetics · 2023Article
- Blood-derived lncRNAs as biomarkers for cancer diagnosis: the Good, the Bad and the Beauty.NPJ precision oncology · 2022Review
- LPInsider: a webserver for lncRNA-protein interaction extraction from the literature.BMC bioinformatics · 2022Article
20 more citing papers are in PubMed but not listed here.
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6 authors.
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No grant is acknowledged in the PubMed record.
Abstract
NPInter (http://www.bioinfo.org/NPInter) is a database that integrates experimentally verified functional interactions between noncoding RNAs (excluding tRNAs and rRNAs) and other biomolecules (proteins, RNAs and genomic DNAs). Extensive studies on ncRNA interactions have shown that ncRNAs could act as part of enzymatic or structural complexes, gene regulators or other functional elements. With the development of high-throughput biotechnology, such as cross-linking immunoprecipitation and high-throughput sequencing (CLIP-seq), the number of known ncRNA interactions, especially those formed by protein binding, has grown rapidly in recent years. In this work, we updated NPInter to version 2.0 by collecting ncRNA interactions from recent literature and related databases, expanding the number of entries to 201 107 covering 18 species. In addition, NPInter v2.0 incorporated a service for the BLAST alignment search as well as visualization of interactions.
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