Evidence map›Paper›PMID 24217298›Full record

ArticleMolecular systems biology2013

A pharmaco-epistasis strategy reveals a new cell size controlling pathway in yeast.

Fabien Moretto, Isabelle Sagot, Bertrand Daignan-Fornier, Benoît Pinson

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Dual control of NADeLife · 2019
    Article
  2. Article
  3. Article
  4. Article
  5. Genome Biology and the Evolution of Cell-Size Diversity.Cold Spring Harbor perspectives in biology · 2015
    Review
  6. Article
  7. Article
  8. Cell size control is sirtuin(ly) exciting.Molecular systems biology · 2013
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Fabien Moretto1] Université Bordeaux, IBGC, UMR 5095, Bordeaux, France [2] Institut de Biochimie et Génétique Cellulaires, CNRS UMR 5095, Bordeaux, France.
Isabelle Sagot
Bertrand Daignan-Fornier
Benoît Pinson
Institut de Biochimie et Génétique Cellulaires · FRUniversité de Bordeaux · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell size is a complex quantitative trait resulting from interactions between intricate genetic networks and environmental conditions. Here, taking advantage of previous studies that uncovered hundreds of genes affecting budding yeast cell size homeostasis, we performed a wide pharmaco-epistasis analysis using drugs mimicking cell size mutations. Simple epistasis relationship emerging from this approach allowed us to characterize a new cell size homeostasis pathway comprising the sirtuin Sir2, downstream effectors including the large ribosomal subunit (60S) and the transcriptional regulators Swi4 and Swi6. We showed that this Sir2/60S signaling route acts independently of other previously described cell size controlling pathways and may integrate the metabolic status of the cell through NAD(+) intracellular concentration. Finally, although Sir2 and the 60S subunits regulate both cell size and replicative aging, we found that there is no clear causal relationship between these two complex traits. This study sheds light on a pathway of >50 genes and illustrates how pharmaco-epistasis applied to yeast offers a potent experimental framework to explore complex genotype/phenotype relationships.

Indexed as

Epistasis, GeneticGene Expression Regulation, FungalDNA-Binding ProteinsGenotypeHomeostasisModels, GeneticMutationNADPhenotypeQuantitative Trait LociRibosome Subunits, Large, EukaryoticSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionSilent Information Regulator Proteins, Saccharomyces cerevisiaeSirtuin 2DNA-Binding ProteinsNADSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR2 protein, S cerevisiaeSirtuin 2SWI4 protein, S cerevisiaeSWI6 protein, S cerevisiaeTranscription Factors

Identifiers

PMID24217298
PMCPMC4039374
OpenAlexW2128129151

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.