Evidence map›Paper›PMID 24216489›Full record

ArticleVeterinary microbiology2014

Molecular characterization of canine coronavirus strains circulating in Brazil.

Erika Moutinho Costa, Tatiana Xavier de Castro, Fernanda de Oliveira Bottino, Rita de Cássia Nasser Cubel Garcia

Open access · greenAbstract read
In one paragraph

Article in Veterinary microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 57 citations in OpenAlex.

  1. Pooled it
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  5. Review
  6. Article
  7. Development of a nanoparticle-assisted PCR assay to distinguish canine coronaviruses I and II.Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2021
    Article
  8. Review
  9. Review
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  11. Molecular diversity ofHeliyon · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Erika Moutinho CostaDepartamento de Microbiologia e Parasitologia, Instituto Biomédico, Universidade Federal Fluminense, Rua Prof. Hernani Melo, 101, CEP 24210-130 Niterói, Rio de Janeiro, Brazil.
Tatiana Xavier de CastroDepartamento de Microbiologia e Parasitologia, Instituto Biomédico, Universidade Federal Fluminense, Rua Prof. Hernani Melo, 101, CEP 24210-130 Niterói, Rio de Janeiro, Brazil.
Fernanda de Oliveira BottinoDepartamento de Microbiologia e Parasitologia, Instituto Biomédico, Universidade Federal Fluminense, Rua Prof. Hernani Melo, 101, CEP 24210-130 Niterói, Rio de Janeiro, Brazil.
Rita de Cássia Nasser Cubel GarciaDepartamento de Microbiologia e Parasitologia, Instituto Biomédico, Universidade Federal Fluminense, Rua Prof. Hernani Melo, 101, CEP 24210-130 Niterói, Rio de Janeiro, Brazil. Electronic address: ritacubel@id.uff.br.
Universidade Federal Fluminense · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To characterize canine coronavirus (CCoV) circulating in diarrheic puppies in Brazil, 250 fecal samples collected between 2006 and 2012 were tested. By using RT-PCR to partially amplify the M gene, CCoV RNA was detected in 30 samples. Sequence analysis of the M protein grouped eight strains with CCoV-I and another 19 with CCoV-II prototypes. To genotype/subtype the CCoV strains and assess the occurrence of single or multiple CCoV infections, RT-PCR of the S gene was performed, and 25/30 CCoV-positive strains amplified with one or two primer pairs. For 17/25 samples, single infections were detected as follows: six CCoV-I, nine CCoV-IIa and two CCoV-IIb. Eight samples were positive for more than one genotype/subtype as follows: seven CCoV-I/IIa and one CCoV-I/IIb. Sequence analysis revealed that the CCoV-I and IIa strains shared high genetic similarity to each other and to the prototypes. The Brazilian strains of CCoV-IIb displayed an aminoacid insertion that was also described in CCoV-IIb-UCD-1 and TGEV strains. Among the 25 CCoV-positive puppies, five had a fatal outcome, all but one of which were cases of mixed infection. The current study is the first reported molecular characterization of CCoV-I, IIa and IIb strains in Brazil.

Indexed as

AnimalsBrazilCoinfectionCoronavirus, CanineCoronavirus InfectionsCoronavirus M ProteinsDog DiseasesDogsFecesGenotypeMolecular Sequence DataPhylogenyReverse Transcriptase Polymerase Chain ReactionSequence AnalysisSpike Glycoprotein, CoronavirusViral Matrix ProteinsCoronavirus M ProteinsSpike Glycoprotein, Coronavirusspike protein, canine coronavirusViral Matrix ProteinsBrazilCanine coronavirusEnteritisGenotypeSubtype

Identifiers

PMID24216489
PMCPMC7117457
OpenAlexW2069001827

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.